RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 NFS1Q9Y697 457 aa11.44□□□□□ -0.58
USP4-214ENST00000491791 MCM3APO60318 1980 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 UMODL1Q5DID0 1318 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 SLC15A5A6NIM6 579 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 SRRM3A6NNA2 597 aaPredicted RBP11.43□□□□□ -0.58
USP4-214ENST00000491791 MYO1FO00160 1098 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 TTI1O43156 1089 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 SPOPO43791 374 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 PPFIA2O75334 1257 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 TNNC2P02585 160 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 CALB1P05937 261 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 PAEPP09466 180 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 PYGMP11217 842 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 RRM1P23921 792 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 MARK3P27448 753 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 TMOD1P28289 359 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 GRK4P32298 578 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 MAMLD1Q13495 774 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 TRADDQ15628 312 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 NAA35Q5VZE5 725 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 SPOPLQ6IQ16 392 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 TMEM270Q6UE05 265 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 KATNAL2Q8IYT4 538 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 ZDHHC14Q8IZN3 488 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 LRRC71Q8N4P6 559 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 DPF3Q92784 378 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 DDX27Q96GQ7 796 aaKnown RBP11.43□□□□□ -0.58
USP4-214ENST00000491791 ANKRD36BP1Q96IX9 119 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 ZIM3Q96PE6 472 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 TCHPQ9BT92 498 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 HTATIP2Q9BUP3 242 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 ABHD16BQ9H3Z7 469 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 FAM204AQ9H8W3 233 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 CYP3A43Q9HB55 503 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 PARVAQ9NVD7 372 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 ADAM22Q9P0K1 906 aa11.43□□□□□ -0.58
USP4-214ENST00000491791 COLQQ9Y215 455 aaPredicted RBP11.43□□□□□ -0.58
USP4-214ENST00000491791 ESYT3A0FGR9 886 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 RRN3P2A6NIE6 340 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 DAPK3O43293 454 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 ZEB2O60315 1214 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 PTPN7P35236 360 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 COILP38432 576 aaPredicted RBP11.42□□□□□ -0.58
USP4-214ENST00000491791 ASPAP45381 313 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 MARCKSL1P49006 195 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 MYL6P60660 151 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 MRPS25P82663 173 aaKnown RBP11.42□□□□□ -0.58
USP4-214ENST00000491791 PPP1R15BQ5SWA1 713 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 TMEM63BQ5T3F8 832 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 EEF1DP3Q658K8 133 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 MTHFD1LQ6UB35 978 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 ZNF771Q7L3S4 317 aaPredicted RBP11.42□□□□□ -0.58
USP4-214ENST00000491791 GPR142Q7Z601 462 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 PLEKHH3Q7Z736 793 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 JAMLQ86YT9 394 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 NIPA2Q8N8Q9 360 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 TMEM35BQ8NCS4 154 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 SLAIN1Q8ND83 568 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 EXD1Q8NHP7 514 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.42□□□□□ -0.58
USP4-214ENST00000491791 FEZF2Q8TBJ5 459 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 CPA5Q8WXQ8 436 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 MAML3Q96JK9 1138 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 TSPAN18Q96SJ8 248 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 TINF2Q9BSI4 451 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 MTMR12Q9C0I1 747 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 RNF208Q9H0X6 261 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 MINDY3Q9H8M7 445 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 RPF1Q9H9Y2 349 aaKnown RBP11.42□□□□□ -0.58
USP4-214ENST00000491791 ERVK-5Q9HDB9 667 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 CISHQ9NSE2 258 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 FEZ2Q9UHY8 353 aaPredicted RBP11.42□□□□□ -0.58
USP4-214ENST00000491791 ANAPC7Q9UJX3 599 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 PRDM4Q9UKN5 801 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 DERAQ9Y315 318 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 C2CD2Q9Y426 696 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 IVNS1ABPQ9Y6Y0 642 aa11.42□□□□□ -0.58
USP4-214ENST00000491791 TRIOBPQ9H2D6 2365 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 A0A1B0GUA9 196 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 GOLGA6CA6NDK9 693 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 TMEM191CA6NGB0 347 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 INO80B-WBP1J3KQ70 363 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 ATMINO43313 823 aaPredicted RBP11.41□□□□□ -0.58
USP4-214ENST00000491791 IGHA2P01877 340 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 GJB1P08034 283 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 WEE2P0C1S8 567 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 IQCF3P0C7M6 154 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 TMEM191BP0C7N4 346 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 GOLGA6DP0CG33 693 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 RARAP10276 462 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 CAPN2P17655 700 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 GJA8P48165 433 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 EIF3BP55884 814 aaKnown RBP11.41□□□□□ -0.58
USP4-214ENST00000491791 KLF1Q13351 362 aaPredicted RBP11.41□□□□□ -0.58
USP4-214ENST00000491791 ZNF211Q13398 564 aaPredicted RBP11.41□□□□□ -0.58
USP4-214ENST00000491791 TRPC3Q13507 836 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 MTFR1Q15390 333 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 UAP1Q16222 522 aaPredicted RBP11.41□□□□□ -0.58
USP4-214ENST00000491791 ZNF568Q3ZCX4 644 aa11.41□□□□□ -0.58
USP4-214ENST00000491791 MARCH8Q5T0T0 291 aa11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms