RNA–Protein interactions for RNA: ENST00000489540.1

MDC1-206, Transcript of mediator of DNA damage checkpoint 1, humanhuman

TSL 2

Gene MDC1, Length 1,402 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MDC1-206ENST00000489540 PPM1LQ5SGD2 360 aa18.69■□□□□ 0.58
MDC1-206ENST00000489540 TRAPPC11Q7Z392 1133 aa18.69■□□□□ 0.58
MDC1-206ENST00000489540 THEM5Q8N1Q8 247 aa18.69■□□□□ 0.58
MDC1-206ENST00000489540 ERCC4Q92889 916 aaPredicted RBP18.69■□□□□ 0.58
MDC1-206ENST00000489540 POMKQ9H5K3 350 aa18.69■□□□□ 0.58
MDC1-206ENST00000489540 PIDD1Q9HB75 910 aa18.69■□□□□ 0.58
MDC1-206ENST00000489540 SIX4Q9UIU6 781 aa18.69■□□□□ 0.58
MDC1-206ENST00000489540 NR2E1Q9Y466 385 aa18.69■□□□□ 0.58
MDC1-206ENST00000489540 PTPRJQ12913 1337 aa18.68■□□□□ 0.58
MDC1-206ENST00000489540 WDR27A2RRH5 827 aa18.68■□□□□ 0.58
MDC1-206ENST00000489540 LOC730098B7Z3J9 87 aa18.68■□□□□ 0.58
MDC1-206ENST00000489540 MAPK13O15264 365 aa18.68■□□□□ 0.58
MDC1-206ENST00000489540 C8AP07357 584 aa18.68■□□□□ 0.58
MDC1-206ENST00000489540 ATF2P15336 505 aa18.68■□□□□ 0.58
MDC1-206ENST00000489540 NR2F2P24468 414 aa18.68■□□□□ 0.58
MDC1-206ENST00000489540 PRCPP42785 496 aa18.68■□□□□ 0.58
MDC1-206ENST00000489540 ADAM9Q13443 819 aa18.68■□□□□ 0.58
MDC1-206ENST00000489540 EDRF1Q3B7T1 1238 aa18.68■□□□□ 0.58
MDC1-206ENST00000489540 CEP135Q66GS9 1140 aa18.68■□□□□ 0.58
MDC1-206ENST00000489540 SMYD4Q8IYR2 804 aaPredicted RBP18.68■□□□□ 0.58
MDC1-206ENST00000489540 PARD3BQ8TEW8 1205 aa18.68■□□□□ 0.58
MDC1-206ENST00000489540 SMG7Q92540 1137 aaKnown RBP18.68■□□□□ 0.58
MDC1-206ENST00000489540 ZNF707Q96C28 371 aaPredicted RBP18.68■□□□□ 0.58
MDC1-206ENST00000489540 RPGRIP1Q96KN7 1286 aa18.68■□□□□ 0.58
MDC1-206ENST00000489540 CD320Q9NPF0 282 aa18.68■□□□□ 0.58
MDC1-206ENST00000489540 GDAP2Q9NXN4 497 aa18.68■□□□□ 0.58
MDC1-206ENST00000489540 AFF4Q9UHB7 1163 aaKnown RBP18.68■□□□□ 0.58
MDC1-206ENST00000489540 CDH22Q9UJ99 828 aa18.68■□□□□ 0.58
MDC1-206ENST00000489540 VCANP13611 3396 aa18.68■□□□□ 0.58
MDC1-206ENST00000489540 HUS1O60921 280 aa18.67■□□□□ 0.58
MDC1-206ENST00000489540 XYLBO75191 536 aa18.67■□□□□ 0.58
MDC1-206ENST00000489540 PPP1R2P41236 205 aa18.67■□□□□ 0.58
MDC1-206ENST00000489540 CASP4P49662 377 aa18.67■□□□□ 0.58
MDC1-206ENST00000489540 CLDN10P78369 228 aa18.67■□□□□ 0.58
MDC1-206ENST00000489540 BFSP1Q12934 665 aa18.67■□□□□ 0.58
MDC1-206ENST00000489540 STIM1Q13586 685 aa18.67■□□□□ 0.58
MDC1-206ENST00000489540 WSCD1Q658N2 575 aa18.67■□□□□ 0.58
MDC1-206ENST00000489540 SLC7A14Q8TBB6 771 aa18.67■□□□□ 0.58
MDC1-206ENST00000489540 TMC2Q8TDI7 906 aa18.67■□□□□ 0.58
MDC1-206ENST00000489540 HPDLQ96IR7 371 aa18.67■□□□□ 0.58
MDC1-206ENST00000489540 FAM84AQ96KN4 292 aa18.67■□□□□ 0.58
MDC1-206ENST00000489540 PRRG1O14668 218 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 POU2F2P09086 479 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 CPB1P15086 417 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 PSMC2P35998 433 aaKnown RBP18.66■□□□□ 0.58
MDC1-206ENST00000489540 GPR17Q13304 367 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 ZCWPW2Q504Y3 356 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 CENPPQ6IPU0 288 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 DPH6Q7L8W6 267 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 TCEAL8Q8IYN2 117 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 ADSSL1Q8N142 457 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 SPATA18Q8TC71 538 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 ZNF516Q92618 1163 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 TSG101Q99816 390 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 GZF1Q9H116 711 aaPredicted RBP18.66■□□□□ 0.58
MDC1-206ENST00000489540 WDR6Q9NNW5 1121 aaKnown RBP18.66■□□□□ 0.58
MDC1-206ENST00000489540 TSHZ2Q9NRE2 1034 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 MAN1B1Q9UKM7 699 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 USTQ9Y2C2 406 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 TCF20Q9UGU0 1960 aaKnown RBP18.66■□□□□ 0.58
MDC1-206ENST00000489540 PDCD11Q14690 1871 aaKnown RBP18.66■□□□□ 0.58
MDC1-206ENST00000489540 IKBKBO14920 756 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 PHACTR2O75167 634 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 CST3P01034 146 aaPredicted RBP18.66■□□□□ 0.58
MDC1-206ENST00000489540 ENPEPQ07075 957 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 ADCY1Q08828 1119 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 TRPC3Q13507 836 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 SCARA3Q6AZY7 606 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 INTS8Q75QN2 995 aaKnown RBP18.66■□□□□ 0.58
MDC1-206ENST00000489540 TMEM86AQ8N2M4 240 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 TOP6BLQ8N6T0 577 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 PLEKHO2Q8TD55 490 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 GBP4Q96PP9 640 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 CYP4F11Q9HBI6 524 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 SNX9Q9Y5X1 595 aa18.66■□□□□ 0.58
MDC1-206ENST00000489540 LRRIQ3A6PVS8 624 aaPredicted RBP18.65■□□□□ 0.58
MDC1-206ENST00000489540 CETN3O15182 167 aa18.65■□□□□ 0.58
MDC1-206ENST00000489540 AKAP3O75969 853 aa18.65■□□□□ 0.58
MDC1-206ENST00000489540 ATICP31939 592 aa18.65■□□□□ 0.58
MDC1-206ENST00000489540 SMARCB1Q12824 385 aa18.65■□□□□ 0.58
MDC1-206ENST00000489540 RNF19BQ6ZMZ0 732 aa18.65■□□□□ 0.58
MDC1-206ENST00000489540 OTOP3Q7RTS5 596 aa18.65■□□□□ 0.58
MDC1-206ENST00000489540 FAM186BQ8IYM0 893 aa18.65■□□□□ 0.58
MDC1-206ENST00000489540 PLCD3Q8N3E9 789 aa18.65■□□□□ 0.58
MDC1-206ENST00000489540 PDCL2Q8N4E4 241 aa18.65■□□□□ 0.58
MDC1-206ENST00000489540 FEZF2Q8TBJ5 459 aa18.65■□□□□ 0.58
MDC1-206ENST00000489540 ACSF2Q96CM8 615 aaPredicted RBP18.65■□□□□ 0.58
MDC1-206ENST00000489540 DHTKD1Q96HY7 919 aaPredicted RBP18.65■□□□□ 0.58
MDC1-206ENST00000489540 VWA8A3KMH1 1905 aa18.64■□□□□ 0.57
MDC1-206ENST00000489540 PSMA7O14818 248 aa18.64■□□□□ 0.57
MDC1-206ENST00000489540 CCL16O15467 120 aa18.64■□□□□ 0.57
MDC1-206ENST00000489540 SEC24AO95486 1093 aa18.64■□□□□ 0.57
MDC1-206ENST00000489540 STAU1O95793 577 aaKnown RBP18.64■□□□□ 0.57
MDC1-206ENST00000489540 LRG1P02750 347 aa18.64■□□□□ 0.57
MDC1-206ENST00000489540 C4BPAP04003 597 aaKnown RBP18.64■□□□□ 0.57
MDC1-206ENST00000489540 FAM163BP0C2L3 166 aa18.64■□□□□ 0.57
MDC1-206ENST00000489540 KRT13P13646 458 aa18.64■□□□□ 0.57
MDC1-206ENST00000489540 LHX1P48742 406 aa18.64■□□□□ 0.57
MDC1-206ENST00000489540 VAMP7P51809 220 aa18.64■□□□□ 0.57
MDC1-206ENST00000489540 FKBP3Q00688 224 aaKnown RBP18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms