RNA–Protein interactions for RNA: ENST00000489318.1

C9orf3-220, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 682 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-220ENST00000489318 SCARA5Q6ZMJ2 495 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 PALB2Q86YC2 1186 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 WHAMMQ8TF30 809 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 VWCEQ96DN2 955 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 C16orf45Q96MC5 204 aaPredicted RBP12.28□□□□□ -0.44
C9orf3-220ENST00000489318 LACRTQ9GZZ8 138 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 SMYD3Q9H7B4 428 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 GOLGA2P5Q9HBQ8 144 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 ACP6Q9NPH0 428 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 RNF19AQ9NV58 838 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 MIOSQ9NXC5 875 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 MYO1AQ9UBC5 1043 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 NXF1Q9UBU9 619 aaKnown RBP12.28□□□□□ -0.44
C9orf3-220ENST00000489318 ATP11BQ9Y2G3 1177 aa12.28□□□□□ -0.44
C9orf3-220ENST00000489318 R3HCC1Q9Y3T6 440 aaKnown RBP12.28□□□□□ -0.44
C9orf3-220ENST00000489318 PTPRSQ13332 1948 aa12.27□□□□□ -0.44
C9orf3-220ENST00000489318 KRT86O43790 486 aa12.27□□□□□ -0.45
C9orf3-220ENST00000489318 TACC1O75410 805 aa12.27□□□□□ -0.45
C9orf3-220ENST00000489318 CYP1A1P04798 512 aaPredicted RBP12.27□□□□□ -0.45
C9orf3-220ENST00000489318 FAM163BP0C2L3 166 aa12.27□□□□□ -0.45
C9orf3-220ENST00000489318 TNFAIP3P21580 790 aa12.27□□□□□ -0.45
C9orf3-220ENST00000489318 PAX3P23760 479 aa12.27□□□□□ -0.45
C9orf3-220ENST00000489318 GNA15P30679 374 aa12.27□□□□□ -0.45
C9orf3-220ENST00000489318 RPL9P32969 192 aaKnown RBP12.27□□□□□ -0.45
C9orf3-220ENST00000489318 AARSP49588 968 aaKnown RBP eCLIP12.27□□□□□ -0.45
C9orf3-220ENST00000489318 DSC1Q08554 894 aa12.27□□□□□ -0.45
C9orf3-220ENST00000489318 TUSC3Q13454 348 aa12.27□□□□□ -0.45
C9orf3-220ENST00000489318 PTPN14Q15678 1187 aa12.27□□□□□ -0.45
C9orf3-220ENST00000489318 TCTN1Q2MV58 587 aa12.27□□□□□ -0.45
C9orf3-220ENST00000489318 CLLU1OSQ5K130 101 aa12.27□□□□□ -0.45
C9orf3-220ENST00000489318 DPH6Q7L8W6 267 aa12.27□□□□□ -0.45
C9orf3-220ENST00000489318 KIAA1328Q86T90 577 aa12.27□□□□□ -0.45
C9orf3-220ENST00000489318 RPUSD2Q8IZ73 545 aaKnown RBP12.27□□□□□ -0.45
C9orf3-220ENST00000489318 SCLYQ96I15 445 aa12.27□□□□□ -0.45
C9orf3-220ENST00000489318 UROC1Q96N76 676 aa12.27□□□□□ -0.45
C9orf3-220ENST00000489318 PCDHB18PQ96TA0 734 aa12.27□□□□□ -0.45
C9orf3-220ENST00000489318 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP12.27□□□□□ -0.45
C9orf3-220ENST00000489318 PPP1R12CQ9BZL4 782 aa12.27□□□□□ -0.45
C9orf3-220ENST00000489318 ISCUQ9H1K1 167 aa12.27□□□□□ -0.45
C9orf3-220ENST00000489318 BARX2Q9UMQ3 279 aaPredicted RBP12.27□□□□□ -0.45
C9orf3-220ENST00000489318 NCANO14594 1321 aa12.27□□□□□ -0.45
C9orf3-220ENST00000489318 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.26□□□□□ -0.45
C9orf3-220ENST00000489318 KPNA7A9QM74 516 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 ENPP3O14638 875 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 SPTLC1O15269 473 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 CLSTN1O94985 981 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 ABL1P00519 1130 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 MMEP08473 750 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 WEE2P0C1S8 567 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 UNGP13051 313 aaPredicted RBP12.26□□□□□ -0.45
C9orf3-220ENST00000489318 CD58P19256 250 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 CYP2C18P33260 490 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 RAP1GAPP47736 663 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 RAD23BP54727 409 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 LILRA4P59901 499 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 ETF1P62495 437 aaKnown RBP12.26□□□□□ -0.45
C9orf3-220ENST00000489318 CENPCQ03188 943 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 KIF5AQ12840 1032 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 TCEAL1Q15170 157 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 UPP1Q16831 310 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 CCDC122Q5T0U0 273 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 CNKSR3Q6P9H4 555 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 GLB1LQ6UWU2 654 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 TRIM72Q6ZMU5 477 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 UNC93AQ86WB7 457 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 TOP6BLQ8N6T0 577 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 SLC4A11Q8NBS3 891 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 KBTBD7Q8WVZ9 684 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 DDX27Q96GQ7 796 aaKnown RBP12.26□□□□□ -0.45
C9orf3-220ENST00000489318 TWNKQ96RR1 684 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 LZTFL1Q9NQ48 299 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 TMEM39AQ9NV64 488 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 RNF216Q9NWF9 866 aaPredicted RBP12.26□□□□□ -0.45
C9orf3-220ENST00000489318 PCDHGC3Q9UN70 934 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 SNX9Q9Y5X1 595 aa12.26□□□□□ -0.45
C9orf3-220ENST00000489318 KIAA0100Q14667 2235 aaKnown RBP12.26□□□□□ -0.45
C9orf3-220ENST00000489318 A0A0A6YYK5 440 aaPredicted RBP12.25□□□□□ -0.45
C9orf3-220ENST00000489318 ANKRD62A6NC57 917 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 TMEM189-UBE2V1I3L0A0 370 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 PODXLO00592 558 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 FANCGO15287 622 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 HOXA2O43364 376 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 H2AFZP0C0S5 128 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 TMEM253P0C7T8 217 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 TNNT1P13805 278 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 CDH5P33151 784 aaPredicted RBP12.25□□□□□ -0.45
C9orf3-220ENST00000489318 CLCNKBP51801 687 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 CCL23P55773 120 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 CLEC16AQ2KHT3 1053 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 SOWAHAQ2M3V2 549 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 TAF3Q5VWG9 929 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 PPP1R2P3Q6NXS1 205 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 H2AFVQ71UI9 128 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 RNF10Q8N5U6 811 aaKnown RBP12.25□□□□□ -0.45
C9orf3-220ENST00000489318 C3orf58Q8NDZ4 430 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 SPATA18Q8TC71 538 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 ZNF606Q8WXB4 792 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 ZSWIM1Q9BR11 485 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 PACSIN1Q9BY11 444 aa12.25□□□□□ -0.45
C9orf3-220ENST00000489318 ELOVL4Q9GZR5 314 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms