RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 USTQ9Y2C2 406 aa15.01□□□□□ -0.01
SYNE1-226ENST00000488376 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.01□□□□□ -0.01
SYNE1-226ENST00000488376 ARHGEF37A1IGU5 675 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 KPNA7A9QM74 516 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 PRRG1O14668 218 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 KIAA0391O15091 583 aaKnown RBP15□□□□□ -0.01
SYNE1-226ENST00000488376 HCRTO43612 131 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 GPR37L1O60883 481 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 GADD45BO75293 160 aaPredicted RBP15□□□□□ -0.01
SYNE1-226ENST00000488376 SOAT2O75908 522 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 RHOBTB3O94955 611 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 CYP11A1P05108 521 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 MYL1P05976 194 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 KRT19P08727 400 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 DLATP10515 647 aaKnown RBP15□□□□□ -0.01
SYNE1-226ENST00000488376 GBP2P32456 591 aaPredicted RBP15□□□□□ -0.01
SYNE1-226ENST00000488376 BFSP1Q12934 665 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 PSMD2Q13200 908 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 CCDC142Q17RM4 750 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 SLC5A9Q2M3M2 681 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 CYP26C1Q6V0L0 522 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 HS2ST1Q7LGA3 356 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 OTOP3Q7RTS5 596 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 USP37Q86T82 979 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 NT5DC4Q86YG4 428 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 C12orf56Q8IXR9 622 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 SMYD4Q8IYR2 804 aaPredicted RBP15□□□□□ -0.01
SYNE1-226ENST00000488376 XXYLT1Q8NBI6 393 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 ZNF516Q92618 1163 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 EDAQ92838 391 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 CCDC127Q96BQ5 260 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 DMAC2Q9NW81 257 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 ITGA11Q9UKX5 1188 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 L1RE1Q9UN81 338 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 INSL5Q9Y5Q6 135 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 SCN1AP35498 2009 aa15□□□□□ -0.01
SYNE1-226ENST00000488376 TMEM191BP0C7N4 346 aa14.99□□□□□ -0.01
SYNE1-226ENST00000488376 FSHRP23945 695 aa14.99□□□□□ -0.01
SYNE1-226ENST00000488376 PSMD6Q15008 389 aa14.99□□□□□ -0.01
SYNE1-226ENST00000488376 UVSSAQ2YD98 709 aa14.99□□□□□ -0.01
SYNE1-226ENST00000488376 SV2CQ496J9 727 aa14.99□□□□□ -0.01
SYNE1-226ENST00000488376 TPGS2Q68CL5 300 aa14.99□□□□□ -0.01
SYNE1-226ENST00000488376 HFE2Q6ZVN8 426 aa14.99□□□□□ -0.01
SYNE1-226ENST00000488376 LRRTM3Q86VH5 581 aa14.99□□□□□ -0.01
SYNE1-226ENST00000488376 OSTM1Q86WC4 334 aa14.99□□□□□ -0.01
SYNE1-226ENST00000488376 PDCL2Q8N4E4 241 aa14.99□□□□□ -0.01
SYNE1-226ENST00000488376 ATAD1Q8NBU5 361 aa14.99□□□□□ -0.01
SYNE1-226ENST00000488376 CACTINQ8WUQ7 758 aaKnown RBP14.99□□□□□ -0.01
SYNE1-226ENST00000488376 ING5Q8WYH8 240 aa14.99□□□□□ -0.01
SYNE1-226ENST00000488376 ELMO3Q96BJ8 720 aa14.99□□□□□ -0.01
SYNE1-226ENST00000488376 MFSD14AQ96MC6 490 aa14.99□□□□□ -0.01
SYNE1-226ENST00000488376 ZNF560Q96MR9 790 aa14.99□□□□□ -0.01
SYNE1-226ENST00000488376 KIAA1586Q9HCI6 787 aa14.99□□□□□ -0.01
SYNE1-226ENST00000488376 CEP72Q9P209 647 aa14.99□□□□□ -0.01
SYNE1-226ENST00000488376 AFF4Q9UHB7 1163 aaKnown RBP14.99□□□□□ -0.01
SYNE1-226ENST00000488376 SLC27A5Q9Y2P5 690 aa14.99□□□□□ -0.01
SYNE1-226ENST00000488376 TRIOO75962 3097 aa14.99□□□□□ -0.01
SYNE1-226ENST00000488376 MTCL1Q9Y4B5 1905 aaKnown RBP14.98□□□□□ -0.01
SYNE1-226ENST00000488376 MTMR11A4FU01 709 aa14.98□□□□□ -0.01
SYNE1-226ENST00000488376 OR6C75A6NL08 312 aa14.98□□□□□ -0.01
SYNE1-226ENST00000488376 EXOC3O60645 756 aa14.98□□□□□ -0.01
SYNE1-226ENST00000488376 XYLBO75191 536 aa14.98□□□□□ -0.01
SYNE1-226ENST00000488376 RHOP08100 348 aa14.98□□□□□ -0.01
SYNE1-226ENST00000488376 ELF1P32519 619 aa14.98□□□□□ -0.01
SYNE1-226ENST00000488376 CCR2P41597 374 aa14.98□□□□□ -0.01
SYNE1-226ENST00000488376 SNRPFP62306 86 aaKnown RBP14.98□□□□□ -0.01
SYNE1-226ENST00000488376 FAM160A1Q05DH4 1040 aa14.98□□□□□ -0.01
SYNE1-226ENST00000488376 TWF1Q12792 350 aa14.98□□□□□ -0.01
SYNE1-226ENST00000488376 GPR17Q13304 367 aa14.98□□□□□ -0.01
SYNE1-226ENST00000488376 PABPC1LQ4VXU2 614 aaKnown RBP14.98□□□□□ -0.01
SYNE1-226ENST00000488376 SLC39A12Q504Y0 691 aa14.98□□□□□ -0.01
SYNE1-226ENST00000488376 TRIM67Q6ZTA4 783 aa14.98□□□□□ -0.01
SYNE1-226ENST00000488376 WDR49Q8IV35 697 aa14.98□□□□□ -0.01
SYNE1-226ENST00000488376 HS6ST3Q8IZP7 471 aa14.98□□□□□ -0.01
SYNE1-226ENST00000488376 LRRC52Q8N7C0 313 aa14.98□□□□□ -0.01
SYNE1-226ENST00000488376 ACSF2Q96CM8 615 aaPredicted RBP14.98□□□□□ -0.01
SYNE1-226ENST00000488376 TCEAL4Q96EI5 215 aa14.98□□□□□ -0.01
SYNE1-226ENST00000488376 ANKRD36BP1Q96IX9 119 aa14.98□□□□□ -0.01
SYNE1-226ENST00000488376 CGRRF1Q99675 332 aa14.98□□□□□ -0.01
SYNE1-226ENST00000488376 ZCWPW1Q9H0M4 648 aa14.98□□□□□ -0.01
SYNE1-226ENST00000488376 KCNK12Q9HB15 430 aa14.98□□□□□ -0.01
SYNE1-226ENST00000488376 TMLHEQ9NVH6 421 aa14.98□□□□□ -0.01
SYNE1-226ENST00000488376 YIPF1Q9Y548 306 aa14.98□□□□□ -0.01
SYNE1-226ENST00000488376 GOLGA6L4A6NEF3 574 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 TMEM221A6NGB7 291 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 LRRIQ3A6PVS8 624 aaPredicted RBP14.97□□□□□ -0.01
SYNE1-226ENST00000488376 M0R296 226 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 NARSO43776 548 aaKnown RBP14.97□□□□□ -0.01
SYNE1-226ENST00000488376 CST3P01034 146 aaPredicted RBP14.97□□□□□ -0.01
SYNE1-226ENST00000488376 PDGFBP01127 241 aaPredicted RBP14.97□□□□□ -0.01
SYNE1-226ENST00000488376 TNNC2P02585 160 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 LRG1P02750 347 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 NR3C1P04150 777 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 POU2F2P09086 479 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 LAMP2P13473 410 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 CEBPBP17676 345 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 ACAT1P24752 427 aaKnown RBP14.97□□□□□ -0.01
SYNE1-226ENST00000488376 PNPLA4P41247 253 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 DLG4P78352 724 aa14.97□□□□□ -0.01
SYNE1-226ENST00000488376 RBP5P82980 135 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms