RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 CCT6AP40227 531 aaKnown RBP16.76■□□□□ 0.27
MCF2L-228ENST00000487354 RAP1GAPP47736 663 aa16.76■□□□□ 0.27
MCF2L-228ENST00000487354 FXR2P51116 673 aaKnown RBP eCLIP16.76■□□□□ 0.27
MCF2L-228ENST00000487354 KPNA1P52294 538 aaPredicted RBP16.76■□□□□ 0.27
MCF2L-228ENST00000487354 GUCY1B3Q02153 619 aa16.76■□□□□ 0.27
MCF2L-228ENST00000487354 CACNB1Q02641 598 aaPredicted RBP16.76■□□□□ 0.27
MCF2L-228ENST00000487354 TNK2Q07912 1038 aa16.76■□□□□ 0.27
MCF2L-228ENST00000487354 ORC2Q13416 577 aaPredicted RBP16.76■□□□□ 0.27
MCF2L-228ENST00000487354 DGKKQ5KSL6 1271 aa16.76■□□□□ 0.27
MCF2L-228ENST00000487354 HAUS3Q68CZ6 603 aa16.76■□□□□ 0.27
MCF2L-228ENST00000487354 C1orf228Q6PIY5 440 aa16.76■□□□□ 0.27
MCF2L-228ENST00000487354 RALGPS2Q86X27 583 aaPredicted RBP16.76■□□□□ 0.27
MCF2L-228ENST00000487354 SLITRK6Q9H5Y7 841 aa16.76■□□□□ 0.27
MCF2L-228ENST00000487354 DDX19AQ9NUU7 478 aaKnown RBP16.76■□□□□ 0.27
MCF2L-228ENST00000487354 ANGPTL2Q9UKU9 493 aa16.76■□□□□ 0.27
MCF2L-228ENST00000487354 TCHHQ07283 1943 aa16.75■□□□□ 0.27
MCF2L-228ENST00000487354 E9PMD0 336 aa16.75■□□□□ 0.27
MCF2L-228ENST00000487354 EPN2O95208 641 aa16.75■□□□□ 0.27
MCF2L-228ENST00000487354 HARSP12081 509 aaKnown RBP16.75■□□□□ 0.27
MCF2L-228ENST00000487354 LRPAP1P30533 357 aa16.75■□□□□ 0.27
MCF2L-228ENST00000487354 SPAG1Q07617 926 aa16.75■□□□□ 0.27
MCF2L-228ENST00000487354 DUSP4Q13115 394 aa16.75■□□□□ 0.27
MCF2L-228ENST00000487354 NBR1Q14596 966 aa16.75■□□□□ 0.27
MCF2L-228ENST00000487354 ANKRD1Q15327 319 aa16.75■□□□□ 0.27
MCF2L-228ENST00000487354 ZBTB6Q15916 424 aa16.75■□□□□ 0.27
MCF2L-228ENST00000487354 PLA2G2CQ5R387 149 aa16.75■□□□□ 0.27
MCF2L-228ENST00000487354 CENPPQ6IPU0 288 aa16.75■□□□□ 0.27
MCF2L-228ENST00000487354 KCNK18Q7Z418 384 aa16.75■□□□□ 0.27
MCF2L-228ENST00000487354 CHAMP1Q96JM3 812 aa16.75■□□□□ 0.27
MCF2L-228ENST00000487354 TMEM209Q96SK2 561 aa16.75■□□□□ 0.27
MCF2L-228ENST00000487354 ARRDC1-AS1Q9H2J1 176 aa16.75■□□□□ 0.27
MCF2L-228ENST00000487354 MTMR11A4FU01 709 aa16.74■□□□□ 0.27
MCF2L-228ENST00000487354 PPEF2O14830 753 aa16.74■□□□□ 0.27
MCF2L-228ENST00000487354 SLC16A4O15374 487 aa16.74■□□□□ 0.27
MCF2L-228ENST00000487354 FOXD2O60548 495 aaPredicted RBP16.74■□□□□ 0.27
MCF2L-228ENST00000487354 SOAT2O75908 522 aa16.74■□□□□ 0.27
MCF2L-228ENST00000487354 ZNF806P0C7X5 589 aa16.74■□□□□ 0.27
MCF2L-228ENST00000487354 CXCL8P10145 99 aa16.74■□□□□ 0.27
MCF2L-228ENST00000487354 ANAPC15P60006 121 aa16.74■□□□□ 0.27
MCF2L-228ENST00000487354 YWHAHQ04917 246 aaPredicted RBP16.74■□□□□ 0.27
MCF2L-228ENST00000487354 GPR17Q13304 367 aa16.74■□□□□ 0.27
MCF2L-228ENST00000487354 DMP1Q13316 513 aaPredicted RBP16.74■□□□□ 0.27
MCF2L-228ENST00000487354 NOLC1Q14978 699 aaKnown RBP eCLIP16.74■□□□□ 0.27
MCF2L-228ENST00000487354 C1orf186Q6ZWK4 172 aa16.74■□□□□ 0.27
MCF2L-228ENST00000487354 KBTBD6Q86V97 674 aa16.74■□□□□ 0.27
MCF2L-228ENST00000487354 YAF2Q8IY57 180 aa16.74■□□□□ 0.27
MCF2L-228ENST00000487354 IGSF22Q8N9C0 903 aa16.74■□□□□ 0.27
MCF2L-228ENST00000487354 DDX1Q92499 740 aaKnown RBP16.74■□□□□ 0.27
MCF2L-228ENST00000487354 SMOC1Q9H4F8 434 aa16.74■□□□□ 0.27
MCF2L-228ENST00000487354 IL21Q9HBE4 155 aa16.74■□□□□ 0.27
MCF2L-228ENST00000487354 KMT5AQ9NQR1 393 aa16.74■□□□□ 0.27
MCF2L-228ENST00000487354 OBP2AQ9NY56 170 aa16.74■□□□□ 0.27
MCF2L-228ENST00000487354 SLC27A5Q9Y2P5 690 aa16.74■□□□□ 0.27
MCF2L-228ENST00000487354 IGF2RP11717 2491 aa16.74■□□□□ 0.27
MCF2L-228ENST00000487354 PTPRDP23468 1912 aa16.73■□□□□ 0.27
MCF2L-228ENST00000487354 TTC26A0AVF1 554 aa16.73■□□□□ 0.27
MCF2L-228ENST00000487354 PP2D1A8MPX8 630 aa16.73■□□□□ 0.27
MCF2L-228ENST00000487354 AXIN1O15169 862 aa16.73■□□□□ 0.27
MCF2L-228ENST00000487354 KCNA4P22459 653 aa16.73■□□□□ 0.27
MCF2L-228ENST00000487354 WEE1P30291 646 aa16.73■□□□□ 0.27
MCF2L-228ENST00000487354 PXNP49023 591 aaPredicted RBP16.73■□□□□ 0.27
MCF2L-228ENST00000487354 GUCY2FP51841 1108 aa16.73■□□□□ 0.27
MCF2L-228ENST00000487354 PLD1Q13393 1074 aa16.73■□□□□ 0.27
MCF2L-228ENST00000487354 TRIM29Q14134 588 aa16.73■□□□□ 0.27
MCF2L-228ENST00000487354 AASDHQ4L235 1098 aaPredicted RBP16.73■□□□□ 0.27
MCF2L-228ENST00000487354 ARHGAP29Q52LW3 1261 aa16.73■□□□□ 0.27
MCF2L-228ENST00000487354 TTC38Q5R3I4 469 aa16.73■□□□□ 0.27
MCF2L-228ENST00000487354 RINT1Q6NUQ1 792 aa16.73■□□□□ 0.27
MCF2L-228ENST00000487354 CEP68Q76N32 757 aa16.73■□□□□ 0.27
MCF2L-228ENST00000487354 SYNPOQ8N3V7 929 aa16.73■□□□□ 0.27
MCF2L-228ENST00000487354 ATAD1Q8NBU5 361 aa16.73■□□□□ 0.27
MCF2L-228ENST00000487354 GAB3Q8WWW8 586 aa16.73■□□□□ 0.27
MCF2L-228ENST00000487354 PSMG2Q969U7 264 aa16.73■□□□□ 0.27
MCF2L-228ENST00000487354 LOXL4Q96JB6 756 aa16.73■□□□□ 0.27
MCF2L-228ENST00000487354 MMTAG2Q9BU76 263 aaKnown RBP16.73■□□□□ 0.27
MCF2L-228ENST00000487354 POLR3BQ9NW08 1133 aaPredicted RBP16.73■□□□□ 0.27
MCF2L-228ENST00000487354 ANKFY1Q9P2R3 1169 aa16.73■□□□□ 0.27
MCF2L-228ENST00000487354 LRWD1Q9UFC0 647 aa16.73■□□□□ 0.27
MCF2L-228ENST00000487354 AKAP13Q12802 2813 aa16.72■□□□□ 0.27
MCF2L-228ENST00000487354 OTOL1A6NHN0 477 aaPredicted RBP16.72■□□□□ 0.27
MCF2L-228ENST00000487354 FAM189A1O60320 539 aa16.72■□□□□ 0.27
MCF2L-228ENST00000487354 TOM1L1O75674 476 aa16.72■□□□□ 0.27
MCF2L-228ENST00000487354 MAPTP10636 758 aaKnown RBP16.72■□□□□ 0.27
MCF2L-228ENST00000487354 TNFSF9P41273 254 aa16.72■□□□□ 0.27
MCF2L-228ENST00000487354 EPHB3P54753 998 aa16.72■□□□□ 0.27
MCF2L-228ENST00000487354 MCL1Q07820 350 aa16.72■□□□□ 0.27
MCF2L-228ENST00000487354 IL17AQ16552 155 aa16.72■□□□□ 0.27
MCF2L-228ENST00000487354 GPR158Q5T848 1215 aa16.72■□□□□ 0.27
MCF2L-228ENST00000487354 STPG1Q5TH74 334 aa16.72■□□□□ 0.27
MCF2L-228ENST00000487354 IL31Q6EBC2 164 aa16.72■□□□□ 0.27
MCF2L-228ENST00000487354 FSTL4Q6MZW2 842 aa16.72■□□□□ 0.27
MCF2L-228ENST00000487354 DNAJB7Q7Z6W7 309 aaPredicted RBP16.72■□□□□ 0.27
MCF2L-228ENST00000487354 TMEM161BQ8NDZ6 487 aa16.72■□□□□ 0.27
MCF2L-228ENST00000487354 OR10T2Q8NGX3 314 aa16.72■□□□□ 0.27
MCF2L-228ENST00000487354 SNX29Q8TEQ0 813 aa16.72■□□□□ 0.27
MCF2L-228ENST00000487354 LPIN3Q9BQK8 851 aa16.72■□□□□ 0.27
MCF2L-228ENST00000487354 NTPCRQ9BSD7 190 aaKnown RBP16.72■□□□□ 0.27
MCF2L-228ENST00000487354 TCHPQ9BT92 498 aa16.72■□□□□ 0.27
MCF2L-228ENST00000487354 SMG9Q9H0W8 520 aaKnown RBP16.72■□□□□ 0.27
MCF2L-228ENST00000487354 HPS4Q9NQG7 708 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms