RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 SMC2O95347 1197 aa16.8■□□□□ 0.28
HMGA1-206ENST00000478214 SEC24AO95486 1093 aa16.8■□□□□ 0.28
HMGA1-206ENST00000478214 HNRNPA1P09651 372 aaKnown RBP eCLIP16.8■□□□□ 0.28
HMGA1-206ENST00000478214 CPB1P15086 417 aa16.8■□□□□ 0.28
HMGA1-206ENST00000478214 ATF2P15336 505 aa16.8■□□□□ 0.28
HMGA1-206ENST00000478214 TNNI1P19237 187 aa16.8■□□□□ 0.28
HMGA1-206ENST00000478214 HOXA9P31269 272 aa16.8■□□□□ 0.28
HMGA1-206ENST00000478214 ELF1P32519 619 aa16.8■□□□□ 0.28
HMGA1-206ENST00000478214 PNPLA4P41247 253 aa16.8■□□□□ 0.28
HMGA1-206ENST00000478214 BFSP1Q12934 665 aa16.8■□□□□ 0.28
HMGA1-206ENST00000478214 UVSSAQ2YD98 709 aa16.8■□□□□ 0.28
HMGA1-206ENST00000478214 WSCD1Q658N2 575 aa16.8■□□□□ 0.28
HMGA1-206ENST00000478214 TPGS2Q68CL5 300 aa16.8■□□□□ 0.28
HMGA1-206ENST00000478214 CCDC149Q6ZUS6 474 aa16.8■□□□□ 0.28
HMGA1-206ENST00000478214 TRAPPC11Q7Z392 1133 aa16.8■□□□□ 0.28
HMGA1-206ENST00000478214 PLEKHO2Q8TD55 490 aa16.8■□□□□ 0.28
HMGA1-206ENST00000478214 TMEM174Q8WUU8 243 aa16.8■□□□□ 0.28
HMGA1-206ENST00000478214 CYP4F11Q9HBI6 524 aa16.8■□□□□ 0.28
HMGA1-206ENST00000478214 WDR6Q9NNW5 1121 aaKnown RBP16.8■□□□□ 0.28
HMGA1-206ENST00000478214 TRAF3IP3Q9Y228 551 aa16.8■□□□□ 0.28
HMGA1-206ENST00000478214 PCDHA5Q9Y5H7 936 aa16.8■□□□□ 0.28
HMGA1-206ENST00000478214 SCN1AP35498 2009 aa16.8■□□□□ 0.28
HMGA1-206ENST00000478214 CLUHO75153 1309 aa16.79■□□□□ 0.28
HMGA1-206ENST00000478214 ARHGEF37A1IGU5 675 aa16.79■□□□□ 0.28
HMGA1-206ENST00000478214 OR6C75A6NL08 312 aa16.79■□□□□ 0.28
HMGA1-206ENST00000478214 CALUO43852 315 aaPredicted RBP16.79■□□□□ 0.28
HMGA1-206ENST00000478214 CASP4P49662 377 aa16.79■□□□□ 0.28
HMGA1-206ENST00000478214 RNF19BQ6ZMZ0 732 aa16.79■□□□□ 0.28
HMGA1-206ENST00000478214 GRASPQ7Z6J2 395 aaPredicted RBP16.79■□□□□ 0.28
HMGA1-206ENST00000478214 TCEAL8Q8IYN2 117 aa16.79■□□□□ 0.28
HMGA1-206ENST00000478214 TDRD5Q8NAT2 981 aaKnown RBP16.79■□□□□ 0.28
HMGA1-206ENST00000478214 SPATA20Q8TB22 786 aa16.79■□□□□ 0.28
HMGA1-206ENST00000478214 ZNF516Q92618 1163 aa16.79■□□□□ 0.28
HMGA1-206ENST00000478214 SMARCE1Q969G3 411 aa16.79■□□□□ 0.28
HMGA1-206ENST00000478214 GSDMAQ96QA5 445 aa16.79■□□□□ 0.28
HMGA1-206ENST00000478214 TMEM209Q96SK2 561 aa16.79■□□□□ 0.28
HMGA1-206ENST00000478214 OXCT2Q9BYC2 517 aaPredicted RBP16.79■□□□□ 0.28
HMGA1-206ENST00000478214 RMND1Q9NWS8 449 aa16.79■□□□□ 0.28
HMGA1-206ENST00000478214 AFF4Q9UHB7 1163 aaKnown RBP16.79■□□□□ 0.28
HMGA1-206ENST00000478214 MUTYHQ9UIF7 546 aa16.79■□□□□ 0.28
HMGA1-206ENST00000478214 HOOK1Q9UJC3 728 aaKnown RBP16.79■□□□□ 0.28
HMGA1-206ENST00000478214 DSEQ9UL01 958 aa16.79■□□□□ 0.28
HMGA1-206ENST00000478214 POLIQ9UNA4 740 aa16.79■□□□□ 0.28
HMGA1-206ENST00000478214 USTQ9Y2C2 406 aa16.79■□□□□ 0.28
HMGA1-206ENST00000478214 PI4K2BG5E9Z4 385 aa16.78■□□□□ 0.28
HMGA1-206ENST00000478214 PRRG1O14668 218 aa16.78■□□□□ 0.28
HMGA1-206ENST00000478214 XYLBO75191 536 aa16.78■□□□□ 0.28
HMGA1-206ENST00000478214 PRPF40AO75400 957 aaKnown RBP16.78■□□□□ 0.28
HMGA1-206ENST00000478214 VNN2O95498 520 aa16.78■□□□□ 0.28
HMGA1-206ENST00000478214 NTHL1P78549 312 aa16.78■□□□□ 0.28
HMGA1-206ENST00000478214 ADCY1Q08828 1119 aa16.78■□□□□ 0.28
HMGA1-206ENST00000478214 MYBPC2Q14324 1141 aa16.78■□□□□ 0.28
HMGA1-206ENST00000478214 CEP135Q66GS9 1140 aa16.78■□□□□ 0.28
HMGA1-206ENST00000478214 RTL10Q7L3V2 364 aa16.78■□□□□ 0.28
HMGA1-206ENST00000478214 METTL23Q86XA0 190 aa16.78■□□□□ 0.28
HMGA1-206ENST00000478214 ELOA2Q8IYF1 753 aaPredicted RBP16.78■□□□□ 0.28
HMGA1-206ENST00000478214 OR10T2Q8NGX3 314 aa16.78■□□□□ 0.28
HMGA1-206ENST00000478214 PGLYRP2Q96PD5 576 aa16.78■□□□□ 0.28
HMGA1-206ENST00000478214 RTP3Q9BQQ7 232 aa16.78■□□□□ 0.28
HMGA1-206ENST00000478214 L1RE1Q9UN81 338 aa16.78■□□□□ 0.28
HMGA1-206ENST00000478214 R3HCC1Q9Y3T6 440 aaKnown RBP16.78■□□□□ 0.28
HMGA1-206ENST00000478214 MTCL1Q9Y4B5 1905 aaKnown RBP16.78■□□□□ 0.28
HMGA1-206ENST00000478214 LRRIQ3A6PVS8 624 aaPredicted RBP16.77■□□□□ 0.28
HMGA1-206ENST00000478214 DCXO43602 365 aa16.77■□□□□ 0.28
HMGA1-206ENST00000478214 HUS1O60921 280 aa16.77■□□□□ 0.28
HMGA1-206ENST00000478214 N4BP1O75113 896 aaKnown RBP16.77■□□□□ 0.28
HMGA1-206ENST00000478214 CST3P01034 146 aaPredicted RBP16.77■□□□□ 0.28
HMGA1-206ENST00000478214 POU2F2P09086 479 aa16.77■□□□□ 0.28
HMGA1-206ENST00000478214 NR2F2P24468 414 aa16.77■□□□□ 0.28
HMGA1-206ENST00000478214 PRCPP42785 496 aa16.77■□□□□ 0.28
HMGA1-206ENST00000478214 UBE2HP62256 183 aa16.77■□□□□ 0.28
HMGA1-206ENST00000478214 MYO1EQ12965 1108 aa16.77■□□□□ 0.28
HMGA1-206ENST00000478214 GPR17Q13304 367 aa16.77■□□□□ 0.28
HMGA1-206ENST00000478214 ZCWPW2Q504Y3 356 aa16.77■□□□□ 0.28
HMGA1-206ENST00000478214 ZNF658Q5TYW1 1059 aaPredicted RBP16.77■□□□□ 0.28
HMGA1-206ENST00000478214 OTOP3Q7RTS5 596 aa16.77■□□□□ 0.28
HMGA1-206ENST00000478214 PDCL2Q8N4E4 241 aa16.77■□□□□ 0.28
HMGA1-206ENST00000478214 PARD3BQ8TEW8 1205 aa16.77■□□□□ 0.28
HMGA1-206ENST00000478214 ACSF2Q96CM8 615 aaPredicted RBP16.77■□□□□ 0.28
HMGA1-206ENST00000478214 HPDLQ96IR7 371 aa16.77■□□□□ 0.28
HMGA1-206ENST00000478214 HCFC1R1Q9NWW0 138 aa16.77■□□□□ 0.28
HMGA1-206ENST00000478214 GDAP2Q9NXN4 497 aa16.77■□□□□ 0.28
HMGA1-206ENST00000478214 INSL5Q9Y5Q6 135 aa16.77■□□□□ 0.28
HMGA1-206ENST00000478214 SNX9Q9Y5X1 595 aa16.77■□□□□ 0.28
HMGA1-206ENST00000478214 C2orf16Q68DN1 1984 aa16.77■□□□□ 0.27
HMGA1-206ENST00000478214 AKAP3O75969 853 aa16.76■□□□□ 0.27
HMGA1-206ENST00000478214 LRG1P02750 347 aa16.76■□□□□ 0.27
HMGA1-206ENST00000478214 ALADP13716 330 aa16.76■□□□□ 0.27
HMGA1-206ENST00000478214 GBP2P32456 591 aaPredicted RBP16.76■□□□□ 0.27
HMGA1-206ENST00000478214 CDR1P51861 262 aa16.76■□□□□ 0.27
HMGA1-206ENST00000478214 DLG4P78352 724 aa16.76■□□□□ 0.27
HMGA1-206ENST00000478214 NFIL3Q16649 462 aa16.76■□□□□ 0.27
HMGA1-206ENST00000478214 ISM2Q6H9L7 571 aa16.76■□□□□ 0.27
HMGA1-206ENST00000478214 ZDHHC14Q8IZN3 488 aa16.76■□□□□ 0.27
HMGA1-206ENST00000478214 THEM5Q8N1Q8 247 aa16.76■□□□□ 0.27
HMGA1-206ENST00000478214 MYADMQ96S97 322 aa16.76■□□□□ 0.27
HMGA1-206ENST00000478214 CRISPLD1Q9H336 500 aa16.76■□□□□ 0.27
HMGA1-206ENST00000478214 DNMT3BQ9UBC3 853 aaKnown RBP16.76■□□□□ 0.27
HMGA1-206ENST00000478214 LIMD1Q9UGP4 676 aa16.76■□□□□ 0.27
HMGA1-206ENST00000478214 MAFFQ9ULX9 164 aa16.76■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms