RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 MLLT6P55198 1093 aaPredicted RBP13.3□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 DUSP4Q13115 394 aa13.3□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 DHX8Q14562 1220 aaKnown RBP13.3□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 ZC2HC1CQ53FD0 456 aaPredicted RBP13.3□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 CYP4A22Q5TCH4 519 aa13.3□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 C9orf57Q5W0N0 161 aa13.3□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 IQCEQ6IPM2 695 aa13.3□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 MFSD6LQ8IWD5 586 aa13.3□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 ZBTB44Q8NCP5 570 aa13.3□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 SHKBP1Q8TBC3 707 aa13.3□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 BICD1Q96G01 975 aa13.3□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 SENP8Q96LD8 212 aa13.3□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 MKNK1Q9BUB5 465 aa13.3□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 MSTO1Q9BUK6 570 aa13.3□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 BCO2Q9BYV7 579 aa13.3□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 ASB7Q9H672 318 aa13.3□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 ZNF334Q9HCZ1 680 aaPredicted RBP13.3□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 YIPF1Q9Y548 306 aa13.3□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 CLIC4Q9Y696 253 aa13.3□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 TCHHQ07283 1943 aa13.29□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 MTMR11A4FU01 709 aa13.29□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 TISP43B9A030 160 aa13.29□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 NFICP08651 508 aa13.29□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 OR4Q2P0C623 313 aa13.29□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 CPB1P15086 417 aa13.29□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 PSMC3P17980 439 aa13.29□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 MATR3P43243 847 aaKnown RBP eCLIP13.29□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 UBXN2BQ14CS0 331 aa13.29□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 OVOS1Q6IE37 1185 aa13.29□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 ZNF852Q6ZMS4 543 aa13.29□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 TPRG1Q6ZUI0 275 aa13.29□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 ELMOD1Q8N336 334 aa13.29□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 DNAJC19Q96DA6 116 aa13.29□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 RSPRY1Q96DX4 576 aa13.29□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 TMEM209Q96SK2 561 aa13.29□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 TRMT61BQ9BVS5 477 aaKnown RBP13.29□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 GPR88Q9GZN0 384 aa13.29□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 ASAH2Q9NR71 780 aa13.29□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 FBXO2Q9UK22 296 aaPredicted RBP13.29□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 C2CD2Q9Y426 696 aa13.29□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 SRPRBQ9Y5M8 271 aaKnown RBP13.29□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 NUP210Q8TEM1 1887 aaPredicted RBP13.29□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 LILRB5O75023 590 aa13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 TDGF1P13385 188 aa13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 GJA1P17302 382 aa13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 WEE1P30291 646 aa13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 VIPR2P41587 438 aa13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 ACOT2P49753 483 aa13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 FOXK2Q01167 660 aa13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 FCHO2Q0JRZ9 810 aa13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 RESTQ13127 1097 aa13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 GRM2Q14416 872 aa13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 TEAD2Q15562 447 aa13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 SLFN12LQ6IEE8 588 aa13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 ZC3H14Q6PJT7 736 aaKnown RBP13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 DSTYKQ6XUX3 929 aa13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 GAREM2Q75VX8 874 aa13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 USP37Q86T82 979 aa13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 ATAD1Q8NBU5 361 aa13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 OR10T2Q8NGX3 314 aa13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 ZSCAN18Q8TBC5 510 aaPredicted RBP13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 DEPDC1BQ8WUY9 529 aa13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 IRF7Q92985 503 aa13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 LRRC3BQ96PB8 259 aa13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 PGLYRP2Q96PD5 576 aa13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 IKZF4Q9H2S9 585 aa13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 UPF2Q9HAU5 1272 aaKnown RBP13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 PRMT8Q9NR22 394 aaPredicted RBP13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 STK17AQ9UEE5 414 aa13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 ASB3Q9Y575 518 aa13.28□□□□□ -0.28
MSH5-SAPCD1-205ENST00000476085 FRMD3A2A2Y4 597 aa13.27□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 MAN2B1O00754 1011 aa13.27□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 NCAM2O15394 837 aa13.27□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 LAMTOR5O43504 91 aa13.27□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 MYL4P12829 197 aa13.27□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 KCNA1Q09470 495 aa13.27□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 PLD1Q13393 1074 aa13.27□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 TMEM132DQ14C87 1099 aa13.27□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 DNAJB7Q7Z6W7 309 aaPredicted RBP13.27□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 LRRTM3Q86VH5 581 aa13.27□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 TTC9BQ8N6N2 239 aa13.27□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 CXorf38Q8TB03 319 aa13.27□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 PSMG2Q969U7 264 aa13.27□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 E2F7Q96AV8 911 aa13.27□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 HVCN1Q96D96 273 aa13.27□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 ZCWPW1Q9H0M4 648 aa13.27□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 CHRDQ9H2X0 955 aa13.27□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 BRD9Q9H8M2 597 aa13.27□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 SPATA6Q9NWH7 488 aaPredicted RBP13.27□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 AGO2Q9UKV8 859 aaKnown RBP13.27□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 SLC27A5Q9Y2P5 690 aa13.27□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 MRPS17Q9Y2R5 130 aaKnown RBP13.27□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 PCDHGA2Q9Y5H1 932 aa13.27□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 KIF26AQ9ULI4 1882 aaPredicted RBP13.27□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 MYMKA6NI61 221 aa13.26□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 HEPACAM2A8MVW5 462 aa13.26□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 TBCAO75347 108 aaKnown RBP13.26□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 KRT18P05783 430 aaKnown RBP13.26□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 ODC1P11926 461 aa13.26□□□□□ -0.29
MSH5-SAPCD1-205ENST00000476085 PDCP20941 246 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms