RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 PADI4Q9UM07 663 aa4.67□□□□□ -1.66
CCDC88A-212ENST00000474059 DNM3Q9UQ16 869 aa4.67□□□□□ -1.66
CCDC88A-212ENST00000474059 ZNF521Q96K83 1311 aa4.67□□□□□ -1.66
CCDC88A-212ENST00000474059 TARM1B6A8C7 271 aa4.66□□□□□ -1.66
CCDC88A-212ENST00000474059 SLC43A1O75387 559 aa4.66□□□□□ -1.66
CCDC88A-212ENST00000474059 PRKD3O94806 890 aa4.66□□□□□ -1.66
CCDC88A-212ENST00000474059 EYA4O95677 639 aa4.66□□□□□ -1.66
CCDC88A-212ENST00000474059 AGXTP21549 392 aa4.66□□□□□ -1.66
CCDC88A-212ENST00000474059 LPOP22079 712 aaPredicted RBP4.66□□□□□ -1.66
CCDC88A-212ENST00000474059 MPGP29372 298 aa4.66□□□□□ -1.66
CCDC88A-212ENST00000474059 SLC5A3P53794 718 aa4.66□□□□□ -1.66
CCDC88A-212ENST00000474059 NXPH1P58417 271 aa4.66□□□□□ -1.66
CCDC88A-212ENST00000474059 ERVK-21P61565 698 aa4.66□□□□□ -1.66
CCDC88A-212ENST00000474059 HLXQ14774 488 aaPredicted RBP4.66□□□□□ -1.66
CCDC88A-212ENST00000474059 PABPC1LQ4VXU2 614 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-212ENST00000474059 KLHL22Q53GT1 634 aa4.66□□□□□ -1.66
CCDC88A-212ENST00000474059 ZNF365Q70YC5 407 aa4.66□□□□□ -1.66
CCDC88A-212ENST00000474059 DDX46Q7L014 1031 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-212ENST00000474059 YTHDF3Q7Z739 585 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-212ENST00000474059 IL17RDQ8NFM7 739 aa4.66□□□□□ -1.66
CCDC88A-212ENST00000474059 SNX19Q92543 992 aa4.66□□□□□ -1.66
CCDC88A-212ENST00000474059 RGMAQ96B86 450 aa4.66□□□□□ -1.66
CCDC88A-212ENST00000474059 SH2D3AQ9BRG2 576 aa4.66□□□□□ -1.66
CCDC88A-212ENST00000474059 MRPS18AQ9NVS2 196 aaKnown RBP4.66□□□□□ -1.66
CCDC88A-212ENST00000474059 MTMR4Q9NYA4 1195 aa4.66□□□□□ -1.66
CCDC88A-212ENST00000474059 JKAMPQ9P055 326 aa4.66□□□□□ -1.66
CCDC88A-212ENST00000474059 NEU2Q9Y3R4 380 aa4.66□□□□□ -1.66
CCDC88A-212ENST00000474059 ENPP3O14638 875 aa4.65□□□□□ -1.67
CCDC88A-212ENST00000474059 BMP15O95972 392 aa4.65□□□□□ -1.67
CCDC88A-212ENST00000474059 HNRNPCP07910 306 aaKnown RBP eCLIP4.65□□□□□ -1.67
CCDC88A-212ENST00000474059 POU6F2P78424 691 aaPredicted RBP4.65□□□□□ -1.67
CCDC88A-212ENST00000474059 SLC44A4Q53GD3 710 aa4.65□□□□□ -1.67
CCDC88A-212ENST00000474059 CEP78Q5JTW2 689 aa4.65□□□□□ -1.67
CCDC88A-212ENST00000474059 AWAT2Q6E213 333 aa4.65□□□□□ -1.67
CCDC88A-212ENST00000474059 POC1BQ8TC44 478 aa4.65□□□□□ -1.67
CCDC88A-212ENST00000474059 UBXN4Q92575 508 aa4.65□□□□□ -1.67
CCDC88A-212ENST00000474059 DMRTA2Q96SC8 542 aa4.65□□□□□ -1.67
CCDC88A-212ENST00000474059 SEMA4CQ9C0C4 833 aa4.65□□□□□ -1.67
CCDC88A-212ENST00000474059 SPRTNQ9H040 489 aaPredicted RBP4.65□□□□□ -1.67
CCDC88A-212ENST00000474059 BHMT2Q9H2M3 363 aa4.65□□□□□ -1.67
CCDC88A-212ENST00000474059 GPR45Q9Y5Y3 372 aa4.65□□□□□ -1.67
CCDC88A-212ENST00000474059 E7ENX8 843 aa4.64□□□□□ -1.67
CCDC88A-212ENST00000474059 TOR1BO14657 336 aa4.64□□□□□ -1.67
CCDC88A-212ENST00000474059 NPTX2P47972 431 aa4.64□□□□□ -1.67
CCDC88A-212ENST00000474059 CCT8P50990 548 aa4.64□□□□□ -1.67
CCDC88A-212ENST00000474059 ZNF280AP59817 542 aaPredicted RBP4.64□□□□□ -1.67
CCDC88A-212ENST00000474059 CREMQ03060 361 aa4.64□□□□□ -1.67
CCDC88A-212ENST00000474059 TAP2Q03519 686 aa4.64□□□□□ -1.67
CCDC88A-212ENST00000474059 ITIH3Q06033 890 aa4.64□□□□□ -1.67
CCDC88A-212ENST00000474059 ZNF844Q08AG5 666 aa4.64□□□□□ -1.67
CCDC88A-212ENST00000474059 FHL1Q13642 323 aa4.64□□□□□ -1.67
CCDC88A-212ENST00000474059 STAT4Q14765 748 aa4.64□□□□□ -1.67
CCDC88A-212ENST00000474059 TAPT1Q6NXT6 567 aa4.64□□□□□ -1.67
CCDC88A-212ENST00000474059 ZNF517Q6ZMY9 492 aaPredicted RBP4.64□□□□□ -1.67
CCDC88A-212ENST00000474059 FAM9AQ8IZU1 332 aaPredicted RBP4.64□□□□□ -1.67
CCDC88A-212ENST00000474059 B3GALNT2Q8NCR0 500 aa4.64□□□□□ -1.67
CCDC88A-212ENST00000474059 TMX3Q96JJ7 454 aa4.64□□□□□ -1.67
CCDC88A-212ENST00000474059 MRGPRX4Q96LA9 322 aa4.64□□□□□ -1.67
CCDC88A-212ENST00000474059 SMOC2Q9H3U7 446 aa4.64□□□□□ -1.67
CCDC88A-212ENST00000474059 SERTAD4Q9NUC0 356 aa4.64□□□□□ -1.67
CCDC88A-212ENST00000474059 ETAA1Q9NY74 926 aa4.64□□□□□ -1.67
CCDC88A-212ENST00000474059 TUBD1Q9UJT1 453 aa4.64□□□□□ -1.67
CCDC88A-212ENST00000474059 ZBTB21Q9ULJ3 1066 aa4.64□□□□□ -1.67
CCDC88A-212ENST00000474059 ADAMTS3O15072 1205 aa4.63□□□□□ -1.67
CCDC88A-212ENST00000474059 NR2F6P10588 404 aa4.63□□□□□ -1.67
CCDC88A-212ENST00000474059 MTHFD1P11586 935 aaKnown RBP4.63□□□□□ -1.67
CCDC88A-212ENST00000474059 GYS2P54840 703 aa4.63□□□□□ -1.67
CCDC88A-212ENST00000474059 GPR162Q16538 588 aa4.63□□□□□ -1.67
CCDC88A-212ENST00000474059 SUMO4Q6EEV6 95 aa4.63□□□□□ -1.67
CCDC88A-212ENST00000474059 SLC2A7Q6PXP3 512 aa4.63□□□□□ -1.67
CCDC88A-212ENST00000474059 RHOT1Q8IXI2 618 aa4.63□□□□□ -1.67
CCDC88A-212ENST00000474059 FAM109AQ8N4B1 249 aa4.63□□□□□ -1.67
CCDC88A-212ENST00000474059 C7orf25Q9BPX7 421 aa4.63□□□□□ -1.67
CCDC88A-212ENST00000474059 IMPG2Q9BZV3 1241 aa4.63□□□□□ -1.67
CCDC88A-212ENST00000474059 AMBRA1Q9C0C7 1298 aa4.63□□□□□ -1.67
CCDC88A-212ENST00000474059 TTLL1O95922 423 aa4.62□□□□□ -1.67
CCDC88A-212ENST00000474059 CD1AP06126 327 aa4.62□□□□□ -1.67
CCDC88A-212ENST00000474059 CCKBRP32239 447 aa4.62□□□□□ -1.67
CCDC88A-212ENST00000474059 CDC42EP1Q00587 391 aa4.62□□□□□ -1.67
CCDC88A-212ENST00000474059 PREPLQ4J6C6 727 aaPredicted RBP4.62□□□□□ -1.67
CCDC88A-212ENST00000474059 SLC18B1Q6NT16 456 aa4.62□□□□□ -1.67
CCDC88A-212ENST00000474059 COG1Q8WTW3 980 aa4.62□□□□□ -1.67
CCDC88A-212ENST00000474059 AHCYL2Q96HN2 611 aaKnown RBP4.62□□□□□ -1.67
CCDC88A-212ENST00000474059 ADGRE3Q9BY15 652 aa4.62□□□□□ -1.67
CCDC88A-212ENST00000474059 SERHLQ9NQF3 203 aa4.62□□□□□ -1.67
CCDC88A-212ENST00000474059 ZNF580Q9UK33 172 aa4.62□□□□□ -1.67
CCDC88A-212ENST00000474059 INTUQ9ULD6 942 aa4.62□□□□□ -1.67
CCDC88A-212ENST00000474059 LRP12Q9Y561 859 aa4.62□□□□□ -1.67
CCDC88A-212ENST00000474059 PCDHA13Q9Y5I0 950 aa4.62□□□□□ -1.67
CCDC88A-212ENST00000474059 MYO1FO00160 1098 aa4.61□□□□□ -1.67
CCDC88A-212ENST00000474059 PPP6CO00743 305 aa4.61□□□□□ -1.67
CCDC88A-212ENST00000474059 PPEF2O14830 753 aa4.61□□□□□ -1.67
CCDC88A-212ENST00000474059 EBLN1P0CF75 366 aa4.61□□□□□ -1.67
CCDC88A-212ENST00000474059 EDNRBP24530 442 aa4.61□□□□□ -1.67
CCDC88A-212ENST00000474059 TOB1P50616 345 aaPredicted RBP4.61□□□□□ -1.67
CCDC88A-212ENST00000474059 TMPRSS15P98073 1019 aa4.61□□□□□ -1.67
CCDC88A-212ENST00000474059 TLE1Q04724 770 aa4.61□□□□□ -1.67
CCDC88A-212ENST00000474059 FAM153CQ494X1 144 aa4.61□□□□□ -1.67
CCDC88A-212ENST00000474059 LCE1EQ5T753 118 aa4.61□□□□□ -1.67
CCDC88A-212ENST00000474059 SLC9A4Q6AI14 798 aa4.61□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms