RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 SNX32Q86XE0 403 aa5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 BRSK2Q8IWQ3 736 aa5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 ARL6IP6Q8N6S5 226 aa5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 APPL2Q8NEU8 664 aa5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 PJA1Q8NG27 643 aa5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 USP7Q93009 1102 aa5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 CFAP53Q96M91 514 aa5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 CAMKK2Q96RR4 588 aa5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 SARGQ9BW04 601 aa5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 CAAP1Q9H8G2 361 aa5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 OBP2AQ9NY56 170 aa5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 NOB1Q9ULX3 412 aaKnown RBP5.6□□□□□ -1.51
CCDC88A-210ENST00000468534 RPTORQ8N122 1335 aa5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 E2F8A0AVK6 867 aa5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 DRGXA6NNA5 263 aa5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 GSG1L2A8MUP6 293 aa5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 C19orf81C9J6K1 198 aa5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 AKR1B10O60218 316 aa5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 PDE8AO60658 829 aa5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 BAIAP3O94812 1187 aa5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 GASTP01350 101 aa5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 MYCLP1P12525 358 aaPredicted RBP5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 SLC5A1P13866 664 aa5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 ZNF37AP17032 561 aaPredicted RBP5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 CASQ1P31415 396 aa5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 CXCR5P32302 372 aa5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 CRHR1P34998 444 aa5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 TNNT2P45379 298 aaPredicted RBP5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 FLT3LGP49771 235 aa5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 MXRA7P84157 204 aa5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 BIRC3Q13489 604 aa5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 KRT72Q14CN4 511 aa5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 DNAJC21Q5F1R6 531 aaKnown RBP5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 CCDC158Q5M9N0 1113 aa5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 SYCE2Q6PIF2 218 aa5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 LINC00476Q8WZB0 136 aa5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 ELAC2Q9BQ52 826 aaKnown RBP5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 PRDM13Q9H4Q3 707 aa5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 SAGE1Q9NXZ1 904 aa5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 RAI14Q9P0K7 980 aa5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 TESQ9UGI8 421 aaKnown RBP5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 ATP11BQ9Y2G3 1177 aa5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 DGKBQ9Y6T7 804 aa5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 MORC2Q9Y6X9 1032 aaPredicted RBP5.59□□□□□ -1.51
CCDC88A-210ENST00000468534 ANO9A1A5B4 782 aa5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 CXorf49A8MYA2 514 aaPredicted RBP5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 CDKL5O76039 1030 aa5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 CD38P28907 300 aa5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 SOX5P35711 763 aa5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 ID4P47928 161 aa5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 RXRGP48443 463 aa5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 CLRN1P58418 232 aa5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 CPEB4Q17RY0 729 aaKnown RBP eCLIP5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 ERCC6LQ2NKX8 1250 aa5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 SLC10A5Q5PT55 438 aa5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 ABHD17BQ5VST6 288 aa5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 METRNLQ641Q3 311 aa5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 LMBRD2Q68DH5 695 aaPredicted RBP5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 FBXO42Q6P3S6 717 aa5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 PNMA8AQ86V59 439 aaPredicted RBP5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 OR56A1Q8NGH5 318 aa5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 RIN2Q8WYP3 895 aaPredicted RBP5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 HOOK2Q96ED9 719 aa5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 CDK5RAP3Q96JB5 506 aa5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 COQ10AQ96MF6 247 aa5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 MAP3K14Q99558 947 aa5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 ZSWIM1Q9BR11 485 aa5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 RANBP17Q9H2T7 1088 aaKnown RBP5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 TSPY26PQ9H489 355 aa5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 PLCB1Q9NQ66 1216 aa5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 INSL6Q9Y581 213 aa5.58□□□□□ -1.52
CCDC88A-210ENST00000468534 A0A087X0B3 334 aa5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 RFPL1O75677 317 aa5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 AGR2O95994 175 aa5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 TPM2P07951 284 aa5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 GLULP15104 373 aa5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 ADD2P35612 726 aa5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 RENBPP51606 427 aa5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 ZNF280AP59817 542 aaPredicted RBP5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 ROR1Q01973 937 aa5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 TBX2Q13207 712 aaPredicted RBP5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 KIF22Q14807 665 aa5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 MST1LQ2TV78 715 aa5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 CT47A1Q5JQC4 288 aaPredicted RBP5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 FAM47AQ5JRC9 791 aa5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 AGAP9Q5VTM2 703 aa5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 MED25Q71SY5 747 aa5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 RNF180Q86T96 592 aa5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 ARHGEF25Q86VW2 580 aa5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 TRMT2AQ8IZ69 625 aaKnown RBP5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 CLRN3Q8NCR9 226 aa5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 CENPTQ96BT3 561 aa5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 TIFAQ96CG3 184 aa5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 IWS1Q96ST2 819 aa5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 UHRF1Q96T88 793 aaPredicted RBP5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 FAM167BQ9BTA0 163 aa5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 CENPOQ9BU64 300 aa5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 QRSL1Q9H0R6 528 aaKnown RBP5.57□□□□□ -1.52
CCDC88A-210ENST00000468534 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP5.56□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms