RNA–Protein interactions for RNA: ENST00000466897.1

NPHP4-205, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 1,192 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-205ENST00000466897 TBXAS1P24557 533 aaPredicted RBP16.29■□□□□ 0.2
NPHP4-205ENST00000466897 GCNT1Q02742 428 aa16.29■□□□□ 0.2
NPHP4-205ENST00000466897 UBXN1Q04323 297 aa16.29■□□□□ 0.2
NPHP4-205ENST00000466897 KCNMA1Q12791 1236 aa16.29■□□□□ 0.2
NPHP4-205ENST00000466897 USP41Q3LFD5 358 aa16.29■□□□□ 0.2
NPHP4-205ENST00000466897 PDE12Q6L8Q7 609 aaKnown RBP16.29■□□□□ 0.2
NPHP4-205ENST00000466897 ENOSF1Q7L5Y1 443 aa16.29■□□□□ 0.2
NPHP4-205ENST00000466897 SPRED2Q7Z698 418 aa16.29■□□□□ 0.2
NPHP4-205ENST00000466897 JAKMIP2Q96AA8 810 aa16.29■□□□□ 0.2
NPHP4-205ENST00000466897 NAP1L5Q96NT1 182 aaPredicted RBP16.29■□□□□ 0.2
NPHP4-205ENST00000466897 NT5C1BQ96P26 610 aa16.29■□□□□ 0.2
NPHP4-205ENST00000466897 PI4K2AQ9BTU6 479 aa16.29■□□□□ 0.2
NPHP4-205ENST00000466897 TTPALQ9BTX7 342 aa16.29■□□□□ 0.2
NPHP4-205ENST00000466897 OXCT2Q9BYC2 517 aaPredicted RBP16.29■□□□□ 0.2
NPHP4-205ENST00000466897 ZBP1Q9H171 429 aa16.29■□□□□ 0.2
NPHP4-205ENST00000466897 CYP3A43Q9HB55 503 aa16.29■□□□□ 0.2
NPHP4-205ENST00000466897 SSX2IPQ9Y2D8 614 aa16.29■□□□□ 0.2
NPHP4-205ENST00000466897 SIK3Q9Y2K2 1263 aa16.29■□□□□ 0.2
NPHP4-205ENST00000466897 HUS1O60921 280 aa16.28■□□□□ 0.2
NPHP4-205ENST00000466897 LRRN2O75325 713 aa16.28■□□□□ 0.2
NPHP4-205ENST00000466897 OAZ2O95190 189 aa16.28■□□□□ 0.2
NPHP4-205ENST00000466897 CTSAP10619 480 aa16.28■□□□□ 0.2
NPHP4-205ENST00000466897 SLC9A1P19634 815 aa16.28■□□□□ 0.2
NPHP4-205ENST00000466897 ASPAP45381 313 aa16.28■□□□□ 0.2
NPHP4-205ENST00000466897 DSG1Q02413 1049 aa16.28■□□□□ 0.2
NPHP4-205ENST00000466897 GPM6BQ13491 265 aa16.28■□□□□ 0.2
NPHP4-205ENST00000466897 MRPL58Q14197 206 aaKnown RBP16.28■□□□□ 0.2
NPHP4-205ENST00000466897 BMS1Q14692 1282 aaKnown RBP16.28■□□□□ 0.2
NPHP4-205ENST00000466897 SOWAHAQ2M3V2 549 aa16.28■□□□□ 0.2
NPHP4-205ENST00000466897 FAM171A1Q5VUB5 890 aa16.28■□□□□ 0.2
NPHP4-205ENST00000466897 SPOPLQ6IQ16 392 aa16.28■□□□□ 0.2
NPHP4-205ENST00000466897 DPY19L2P1Q6NXN4 242 aa16.28■□□□□ 0.2
NPHP4-205ENST00000466897 TTC39CQ8N584 583 aa16.28■□□□□ 0.2
NPHP4-205ENST00000466897 ARNTL2Q8WYA1 636 aa16.28■□□□□ 0.2
NPHP4-205ENST00000466897 PIK3R5Q8WYR1 880 aa16.28■□□□□ 0.2
NPHP4-205ENST00000466897 CRACR2AQ9BSW2 395 aa16.28■□□□□ 0.2
NPHP4-205ENST00000466897 SIX2Q9NPC8 291 aa16.28■□□□□ 0.2
NPHP4-205ENST00000466897 TLR9Q9NR96 1032 aa16.28■□□□□ 0.2
NPHP4-205ENST00000466897 IFNKQ9P0W0 207 aa16.28■□□□□ 0.2
NPHP4-205ENST00000466897 NXF1Q9UBU9 619 aaKnown RBP16.28■□□□□ 0.2
NPHP4-205ENST00000466897 APEX2Q9UBZ4 518 aa16.28■□□□□ 0.2
NPHP4-205ENST00000466897 FBXL5Q9UKA1 691 aa16.28■□□□□ 0.2
NPHP4-205ENST00000466897 MTUS1Q9ULD2 1270 aa16.28■□□□□ 0.2
NPHP4-205ENST00000466897 IRAK3Q9Y616 596 aa16.28■□□□□ 0.2
NPHP4-205ENST00000466897 I3L4J1 428 aa16.27■□□□□ 0.2
NPHP4-205ENST00000466897 SOX1O00570 391 aaPredicted RBP16.27■□□□□ 0.2
NPHP4-205ENST00000466897 GABRDO14764 452 aa16.27■□□□□ 0.2
NPHP4-205ENST00000466897 FSCN2O14926 492 aa16.27■□□□□ 0.2
NPHP4-205ENST00000466897 WARSP23381 471 aaKnown RBP16.27■□□□□ 0.2
NPHP4-205ENST00000466897 TKTP29401 623 aaKnown RBP16.27■□□□□ 0.2
NPHP4-205ENST00000466897 PBX1P40424 430 aa16.27■□□□□ 0.2
NPHP4-205ENST00000466897 GLUD2P49448 558 aa16.27■□□□□ 0.2
NPHP4-205ENST00000466897 CREMQ03060 361 aa16.27■□□□□ 0.2
NPHP4-205ENST00000466897 INCA1Q0VD86 236 aa16.27■□□□□ 0.2
NPHP4-205ENST00000466897 CUL2Q13617 745 aa16.27■□□□□ 0.2
NPHP4-205ENST00000466897 SYCP1Q15431 976 aa16.27■□□□□ 0.2
NPHP4-205ENST00000466897 KIAA0319Q5VV43 1072 aa16.27■□□□□ 0.2
NPHP4-205ENST00000466897 ANKS3Q6ZW76 656 aa16.27■□□□□ 0.2
NPHP4-205ENST00000466897 VPS52Q8N1B4 723 aa16.27■□□□□ 0.2
NPHP4-205ENST00000466897 PDCL2Q8N4E4 241 aa16.27■□□□□ 0.2
NPHP4-205ENST00000466897 POF1BQ8WVV4 589 aa16.27■□□□□ 0.2
NPHP4-205ENST00000466897 NGRNQ9NPE2 291 aaKnown RBP16.27■□□□□ 0.2
NPHP4-205ENST00000466897 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP16.27■□□□□ 0.2
NPHP4-205ENST00000466897 L1RE1Q9UN81 338 aa16.27■□□□□ 0.2
NPHP4-205ENST00000466897 PTPRDP23468 1912 aa16.27■□□□□ 0.19
NPHP4-205ENST00000466897 MTCL1Q9Y4B5 1905 aaKnown RBP16.27■□□□□ 0.19
NPHP4-205ENST00000466897 GRM6O15303 877 aa16.26■□□□□ 0.19
NPHP4-205ENST00000466897 TEX33O43247 280 aa16.26■□□□□ 0.19
NPHP4-205ENST00000466897 LILRB3O75022 631 aa16.26■□□□□ 0.19
NPHP4-205ENST00000466897 URODP06132 367 aa16.26■□□□□ 0.19
NPHP4-205ENST00000466897 LHX1P48742 406 aa16.26■□□□□ 0.19
NPHP4-205ENST00000466897 YWHAEP62258 255 aaKnown RBP16.26■□□□□ 0.19
NPHP4-205ENST00000466897 YWHAHQ04917 246 aaPredicted RBP16.26■□□□□ 0.19
NPHP4-205ENST00000466897 CAMK1Q14012 370 aa16.26■□□□□ 0.19
NPHP4-205ENST00000466897 RTP2Q5QGT7 225 aa16.26■□□□□ 0.19
NPHP4-205ENST00000466897 VARS2Q5ST30 1063 aaKnown RBP16.26■□□□□ 0.19
NPHP4-205ENST00000466897 PHLDB3Q6NSJ2 640 aa16.26■□□□□ 0.19
NPHP4-205ENST00000466897 TAS1R1Q7RTX1 841 aa16.26■□□□□ 0.19
NPHP4-205ENST00000466897 METTL23Q86XA0 190 aa16.26■□□□□ 0.19
NPHP4-205ENST00000466897 ADGRF2Q8IZF7 708 aa16.26■□□□□ 0.19
NPHP4-205ENST00000466897 KBTBD7Q8WVZ9 684 aa16.26■□□□□ 0.19
NPHP4-205ENST00000466897 TATDN2Q93075 761 aa16.26■□□□□ 0.19
NPHP4-205ENST00000466897 MMS19Q96T76 1030 aa16.26■□□□□ 0.19
NPHP4-205ENST00000466897 XPO4Q9C0E2 1151 aaKnown RBP16.26■□□□□ 0.19
NPHP4-205ENST00000466897 TTYH1Q9H313 450 aaPredicted RBP16.26■□□□□ 0.19
NPHP4-205ENST00000466897 ALG13Q9NP73 1137 aaKnown RBP16.26■□□□□ 0.19
NPHP4-205ENST00000466897 MRPL17Q9NRX2 175 aaKnown RBP16.26■□□□□ 0.19
NPHP4-205ENST00000466897 FNIP2Q9P278 1114 aa16.26■□□□□ 0.19
NPHP4-205ENST00000466897 POLIQ9UNA4 740 aa16.26■□□□□ 0.19
NPHP4-205ENST00000466897 BACE2Q9Y5Z0 518 aa16.26■□□□□ 0.19
NPHP4-205ENST00000466897 ITIH6Q6UXX5 1313 aa16.25■□□□□ 0.19
NPHP4-205ENST00000466897 PLXNA3P51805 1871 aa16.25■□□□□ 0.19
NPHP4-205ENST00000466897 FSD2A1L4K1 749 aa16.25■□□□□ 0.19
NPHP4-205ENST00000466897 EPOPA6NHQ4 379 aa16.25■□□□□ 0.19
NPHP4-205ENST00000466897 H7C4K7 107 aa16.25■□□□□ 0.19
NPHP4-205ENST00000466897 TBC1D4O60343 1298 aa16.25■□□□□ 0.19
NPHP4-205ENST00000466897 LPXNO60711 386 aa16.25■□□□□ 0.19
NPHP4-205ENST00000466897 DNAJB1P25685 340 aa16.25■□□□□ 0.19
NPHP4-205ENST00000466897 SMC1AQ14683 1233 aaKnown RBP16.25■□□□□ 0.19
NPHP4-205ENST00000466897 PTPN14Q15678 1187 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms