RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 TTLL13PA6NNM8 815 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 MAN2B1O00754 1011 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 GADD45BO75293 160 aaPredicted RBP12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 MYL1P05976 194 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 ZNF806P0C7X5 589 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 CASP1P29466 404 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 ABCD1P33897 745 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 CXCL12P48061 93 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 UBE2HP62256 183 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 RING1Q06587 406 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 STRN3Q13033 797 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 CUL4BQ13620 913 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 TMEM132AQ24JP5 1023 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 USP41Q3LFD5 358 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 NT5DC1Q5TFE4 455 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 STPG1Q5TH74 334 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 UNC13DQ70J99 1090 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 GRAMD1CQ8IYS0 662 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 FAM160A2Q8N612 972 aaPredicted RBP12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 C12orf50Q8NA57 414 aaPredicted RBP12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 ITFG1Q8TB96 612 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 CCDC34Q96HJ3 373 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 GBP4Q96PP9 640 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 MRPL4Q9BYD3 311 aaKnown RBP12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 BLZF1Q9H2G9 400 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 PDZD7Q9H5P4 517 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 LMAN1LQ9HAT1 526 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 LHX6Q9UPM6 363 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 TICRRQ7Z2Z1 1910 aa12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 DSPP15924 2871 aaKnown RBP12.97□□□□□ -0.33
SQSTM1-206ENST00000466342 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.96□□□□□ -0.33
SQSTM1-206ENST00000466342 PVALEFA0A1B0GWK0 134 aa12.96□□□□□ -0.33
SQSTM1-206ENST00000466342 CHURC1-FNTBB4DL54 471 aa12.96□□□□□ -0.33
SQSTM1-206ENST00000466342 ECI2O75521 394 aa12.96□□□□□ -0.33
SQSTM1-206ENST00000466342 NMT1P30419 496 aaKnown RBP12.96□□□□□ -0.33
SQSTM1-206ENST00000466342 FNTBP49356 437 aa12.96□□□□□ -0.33
SQSTM1-206ENST00000466342 GTF2BQ00403 316 aa12.96□□□□□ -0.33
SQSTM1-206ENST00000466342 SRSF5Q13243 272 aaKnown RBP12.96□□□□□ -0.33
SQSTM1-206ENST00000466342 SF3A2Q15428 464 aaKnown RBP12.96□□□□□ -0.33
SQSTM1-206ENST00000466342 ATF7IP2Q5U623 682 aa12.96□□□□□ -0.33
SQSTM1-206ENST00000466342 APBB1IPQ7Z5R6 666 aaPredicted RBP12.96□□□□□ -0.33
SQSTM1-206ENST00000466342 DNASE1L2Q92874 299 aa12.96□□□□□ -0.33
SQSTM1-206ENST00000466342 HVCN1Q96D96 273 aa12.96□□□□□ -0.33
SQSTM1-206ENST00000466342 B3GALT6Q96L58 329 aa12.96□□□□□ -0.33
SQSTM1-206ENST00000466342 TMEM121BQ9BXQ6 578 aaPredicted RBP12.96□□□□□ -0.33
SQSTM1-206ENST00000466342 PLA2G2FQ9BZM2 168 aa12.96□□□□□ -0.33
SQSTM1-206ENST00000466342 MRPL44Q9H9J2 332 aaKnown RBP12.96□□□□□ -0.33
SQSTM1-206ENST00000466342 KLK14Q9P0G3 267 aa12.96□□□□□ -0.33
SQSTM1-206ENST00000466342 TBC1D7Q9P0N9 293 aa12.96□□□□□ -0.33
SQSTM1-206ENST00000466342 GCN1Q92616 2671 aaKnown RBP12.96□□□□□ -0.33
SQSTM1-206ENST00000466342 DMXL2Q8TDJ6 3036 aa12.96□□□□□ -0.34
SQSTM1-206ENST00000466342 XYLBO75191 536 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 PRPF40AO75400 957 aaKnown RBP12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 PPP1R37O75864 691 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 GCNT3O95395 438 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 THP07101 528 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 PRR29P0C7W0 189 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 RPL17P18621 184 aaKnown RBP12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 HOXA9P31269 272 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 SATB1Q01826 763 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 CREMQ03060 361 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 EHHADHQ08426 723 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 TUSC3Q13454 348 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 ALCAMQ13740 583 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 DCAF4L1Q3SXM0 396 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 ZC2HC1CQ53FD0 456 aaPredicted RBP12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 PPM1LQ5SGD2 360 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 ZPBP2Q6X784 338 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 ZNF720Q7Z2F6 126 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 LONP2Q86WA8 852 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 NPAS3Q8IXF0 933 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 TIGD1Q96MW7 591 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 ACO2Q99798 780 aaKnown RBP12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 TARS2Q9BW92 718 aaKnown RBP12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 STRA6Q9BX79 667 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 GPR62Q9BZJ7 368 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 RXFP3Q9NSD7 469 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 SNTG2Q9NY99 539 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 FBXW11Q9UKB1 542 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 ADAM28Q9UKQ2 775 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 TBX20Q9UMR3 447 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 POLIQ9UNA4 740 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 TNFSF13BQ9Y275 285 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 USP20Q9Y2K6 914 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 COL4A2P08572 1712 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 ADAMTS20P59510 1910 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 ANK1P16157 1881 aa12.95□□□□□ -0.34
SQSTM1-206ENST00000466342 F8W810 466 aa12.94□□□□□ -0.34
SQSTM1-206ENST00000466342 AXIN1O15169 862 aa12.94□□□□□ -0.34
SQSTM1-206ENST00000466342 CCL16O15467 120 aa12.94□□□□□ -0.34
SQSTM1-206ENST00000466342 KLRC4O43908 158 aa12.94□□□□□ -0.34
SQSTM1-206ENST00000466342 TADA2AO75478 443 aa12.94□□□□□ -0.34
SQSTM1-206ENST00000466342 RECQL4O94761 1208 aa12.94□□□□□ -0.34
SQSTM1-206ENST00000466342 PIGRP01833 764 aa12.94□□□□□ -0.34
SQSTM1-206ENST00000466342 PROZP22891 400 aa12.94□□□□□ -0.34
SQSTM1-206ENST00000466342 CASP5P51878 434 aa12.94□□□□□ -0.34
SQSTM1-206ENST00000466342 DPYDQ12882 1025 aa12.94□□□□□ -0.34
SQSTM1-206ENST00000466342 FAM26FQ5R3K3 315 aa12.94□□□□□ -0.34
SQSTM1-206ENST00000466342 LIN9Q5TKA1 542 aa12.94□□□□□ -0.34
SQSTM1-206ENST00000466342 EEF1DP3Q658K8 133 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms