RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 RFWD3Q6PCD5 774 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 SCYL3Q8IZE3 742 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 GBP7Q8N8V2 638 aaPredicted RBP13.16□□□□□ -0.3
HDAC4-208ENST00000463007 RIPK3Q9Y572 518 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 FAM47DPA6NHR8 397 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 P4HA2O15460 535 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 MAP3K13O43283 966 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 CDH16O75309 829 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 AP1G2O75843 785 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 RGS20O76081 388 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 TCF4P15884 667 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 GBP1P32455 592 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 PIK3CAP42336 1068 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 SNRPFP62306 86 aaKnown RBP13.16□□□□□ -0.3
HDAC4-208ENST00000463007 RIPK1Q13546 671 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 EFTUD2Q15029 972 aaKnown RBP eCLIP13.16□□□□□ -0.32e-6■■■■■ 27.5
HDAC4-208ENST00000463007 GALNTL6Q49A17 601 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 CYFIP1Q7L576 1253 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 DEFB132Q7Z7B7 95 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 FAM13CQ8NE31 585 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 CCHCR1Q8TD31 782 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 C12orf42Q96LP6 360 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 RPS6KC1Q96S38 1066 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 ROPN1BQ9BZX4 212 aaPredicted RBP13.16□□□□□ -0.3
HDAC4-208ENST00000463007 TMEM206Q9H813 350 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 ROPN1Q9HAT0 212 aaPredicted RBP13.16□□□□□ -0.3
HDAC4-208ENST00000463007 PIDD1Q9HB75 910 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 NOCTQ9UK39 431 aaKnown RBP13.16□□□□□ -0.3
HDAC4-208ENST00000463007 GRID1Q9ULK0 1009 aa13.16□□□□□ -0.3
HDAC4-208ENST00000463007 ALAS1P13196 640 aa13.15□□□□□ -0.3
HDAC4-208ENST00000463007 ITIH2P19823 946 aa13.15□□□□□ -0.3
HDAC4-208ENST00000463007 ADSSP30520 456 aa13.15□□□□□ -0.3
HDAC4-208ENST00000463007 MFAP3P55082 362 aa13.15□□□□□ -0.3
HDAC4-208ENST00000463007 HADHBP55084 474 aaKnown RBP13.15□□□□□ -0.3
HDAC4-208ENST00000463007 SLC8A3P57103 927 aa13.15□□□□□ -0.3
HDAC4-208ENST00000463007 GAD2Q05329 585 aa13.15□□□□□ -0.3
HDAC4-208ENST00000463007 GPS1Q13098 491 aa13.15□□□□□ -0.3
HDAC4-208ENST00000463007 TNFAIP1Q13829 316 aa13.15□□□□□ -0.3
HDAC4-208ENST00000463007 MTFR1Q15390 333 aa13.15□□□□□ -0.3
HDAC4-208ENST00000463007 SLC1A5Q15758 541 aa13.15□□□□□ -0.3
HDAC4-208ENST00000463007 SNRNP35Q16560 246 aaKnown RBP13.15□□□□□ -0.3
HDAC4-208ENST00000463007 TMEM63BQ5T3F8 832 aa13.15□□□□□ -0.3
HDAC4-208ENST00000463007 ANKS1BQ7Z6G8 1248 aa13.15□□□□□ -0.3
HDAC4-208ENST00000463007 PDLIM7Q9NR12 457 aa13.15□□□□□ -0.3
HDAC4-208ENST00000463007 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.15□□□□□ -0.31e-6■■■■□ 26.1
HDAC4-208ENST00000463007 OAS1P00973 400 aaKnown RBP13.15□□□□□ -0.3
HDAC4-208ENST00000463007 TAS2R40P59535 323 aa13.15□□□□□ -0.3
HDAC4-208ENST00000463007 XKR9Q5GH70 373 aa13.15□□□□□ -0.3
HDAC4-208ENST00000463007 MFSD5Q6N075 450 aa13.15□□□□□ -0.3
HDAC4-208ENST00000463007 MIS18BP1Q6P0N0 1132 aa13.15□□□□□ -0.3
HDAC4-208ENST00000463007 MAGEB18Q96M61 343 aa13.15□□□□□ -0.3
HDAC4-208ENST00000463007 TRAIPQ9BWF2 469 aa13.15□□□□□ -0.3
HDAC4-208ENST00000463007 RPAP3Q9H6T3 665 aaPredicted RBP13.15□□□□□ -0.3
HDAC4-208ENST00000463007 DLGAP2Q9P1A6 1054 aa13.15□□□□□ -0.3
HDAC4-208ENST00000463007 SMAD1Q15797 465 aaKnown RBP13.14□□□□□ -0.31
HDAC4-208ENST00000463007 SEZ6Q53EL9 994 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 ANO5Q75V66 913 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 CROCCP2Q86T23 111 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 ANKRD35Q8N283 1001 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 CD101Q93033 1021 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 NT5C1BQ96P26 610 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 SMC6Q96SB8 1091 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 DCLK3Q9C098 648 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 ZNF214Q9UL59 606 aaPredicted RBP13.14□□□□□ -0.31
HDAC4-208ENST00000463007 OTOFQ9HC10 1997 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 FZD9O00144 591 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 PPP1R12AO14974 1030 aaPredicted RBP13.14□□□□□ -0.31
HDAC4-208ENST00000463007 ZBED4O75132 1171 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 FDX1P10109 184 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 KRT4P19013 534 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 TNNI1P19237 187 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 EIF2AK2P19525 551 aaKnown RBP13.14□□□□□ -0.31
HDAC4-208ENST00000463007 NRLP54845 237 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 POLE2P56282 527 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 XRRA1Q6P2D8 792 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 LVRNQ6Q4G3 990 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 VSIG10LQ86VR7 867 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 TMEM161BQ8NDZ6 487 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 ATL2Q8NHH9 583 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 ZNF483Q8TF39 744 aaPredicted RBP13.14□□□□□ -0.31
HDAC4-208ENST00000463007 KCNN1Q92952 543 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 ACCSQ96QU6 501 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 FAM213AQ9BRX8 229 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 ANKEF1Q9NU02 776 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 SPATS2LQ9NUQ6 558 aaKnown RBP13.14□□□□□ -0.31
HDAC4-208ENST00000463007 NEU2Q9Y3R4 380 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 SMNDC1O75940 238 aaKnown RBP eCLIP13.14□□□□□ -0.31
HDAC4-208ENST00000463007 IVDP26440 423 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 ALDH3A1P30838 453 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 SSTR1P30872 391 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 NSFP46459 744 aaKnown RBP13.14□□□□□ -0.31
HDAC4-208ENST00000463007 PTDSS1P48651 473 aaKnown RBP13.14□□□□□ -0.31
HDAC4-208ENST00000463007 ARSEP51690 589 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 JAK3P52333 1124 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 TMEM154Q6P9G4 183 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 MAB21L3Q8N8X9 362 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 RDM1Q8NG50 284 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 UCMAQ8WVF2 138 aa13.14□□□□□ -0.31
HDAC4-208ENST00000463007 PSPC1Q8WXF1 523 aaKnown RBP13.14□□□□□ -0.31
HDAC4-208ENST00000463007 FBXL18Q96ME1 805 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms