RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 SIX4Q9UIU6 781 aa12.78□□□□□ -0.36
VPS52-213ENST00000461743 MAN1B1Q9UKM7 699 aa12.78□□□□□ -0.36
VPS52-213ENST00000461743 USP15Q9Y4E8 981 aaPredicted RBP12.78□□□□□ -0.36
VPS52-213ENST00000461743 PTPRJQ12913 1337 aa12.78□□□□□ -0.36
VPS52-213ENST00000461743 NUP210Q8TEM1 1887 aaPredicted RBP12.78□□□□□ -0.36
VPS52-213ENST00000461743 PATJQ8NI35 1801 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 KPNA7A9QM74 516 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 IKBKBO14920 756 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 HNRNPA1P09651 372 aaKnown RBP eCLIP12.77□□□□□ -0.37
VPS52-213ENST00000461743 KRT13P13646 458 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 IL9P15248 144 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 IGFBP6P24592 240 aaPredicted RBP12.77□□□□□ -0.37
VPS52-213ENST00000461743 CCNE1P24864 410 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 OR1D2P34982 312 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 PSMC2P35998 433 aaKnown RBP12.77□□□□□ -0.37
VPS52-213ENST00000461743 MCCD1P59942 119 aaPredicted RBP12.77□□□□□ -0.37
VPS52-213ENST00000461743 ROR1Q01973 937 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 CBX2Q14781 532 aaPredicted RBP12.77□□□□□ -0.37
VPS52-213ENST00000461743 CLUL1Q15846 466 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 UVSSAQ2YD98 709 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 CTXN3Q4LDR2 81 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 CEP135Q66GS9 1140 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 CCDC149Q6ZUS6 474 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 TRAPPC11Q7Z392 1133 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 METTL23Q86XA0 190 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 ADHFE1Q8IWW8 467 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 CSGALNACT2Q8N6G5 542 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 TOP6BLQ8N6T0 577 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 RDH13Q8NBN7 331 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 KREMEN2Q8NCW0 462 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 OR5B17Q8NGF7 314 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 UHRF1Q96T88 793 aaPredicted RBP12.77□□□□□ -0.37
VPS52-213ENST00000461743 GZF1Q9H116 711 aaPredicted RBP12.77□□□□□ -0.37
VPS52-213ENST00000461743 LMBRD1Q9NUN5 540 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 KIAA1468Q9P260 1216 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 FBXL5Q9UKA1 691 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 AGAP1Q9UPQ3 857 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 MAPK8IP1Q9UQF2 711 aa12.77□□□□□ -0.37
VPS52-213ENST00000461743 ZNF638Q14966 1978 aaKnown RBP12.77□□□□□ -0.37
VPS52-213ENST00000461743 BICDL2A1A5D9 508 aa12.76□□□□□ -0.37
VPS52-213ENST00000461743 LRRIQ3A6PVS8 624 aaPredicted RBP12.76□□□□□ -0.37
VPS52-213ENST00000461743 CYB561D2O14569 222 aa12.76□□□□□ -0.37
VPS52-213ENST00000461743 CETN3O15182 167 aa12.76□□□□□ -0.37
VPS52-213ENST00000461743 SPTLC1O15269 473 aa12.76□□□□□ -0.37
VPS52-213ENST00000461743 ZMYND10O75800 440 aa12.76□□□□□ -0.37
VPS52-213ENST00000461743 ABLIM3O94929 683 aa12.76□□□□□ -0.37
VPS52-213ENST00000461743 KRT19P08727 400 aa12.76□□□□□ -0.37
VPS52-213ENST00000461743 EPB41P11171 864 aaKnown RBP12.76□□□□□ -0.37
VPS52-213ENST00000461743 ATICP31939 592 aa12.76□□□□□ -0.37
VPS52-213ENST00000461743 FKBP3Q00688 224 aaKnown RBP12.76□□□□□ -0.37
VPS52-213ENST00000461743 SMARCB1Q12824 385 aa12.76□□□□□ -0.37
VPS52-213ENST00000461743 BFSP1Q12934 665 aa12.76□□□□□ -0.37
VPS52-213ENST00000461743 ADAM9Q13443 819 aa12.76□□□□□ -0.37
VPS52-213ENST00000461743 RARS2Q5T160 578 aaKnown RBP12.76□□□□□ -0.37
VPS52-213ENST00000461743 LMBRD2Q68DH5 695 aaPredicted RBP12.76□□□□□ -0.37
VPS52-213ENST00000461743 DPH6Q7L8W6 267 aa12.76□□□□□ -0.37
VPS52-213ENST00000461743 GPR149Q86SP6 731 aa12.76□□□□□ -0.37
VPS52-213ENST00000461743 PALB2Q86YC2 1186 aa12.76□□□□□ -0.37
VPS52-213ENST00000461743 GLYCTKQ8IVS8 523 aa12.76□□□□□ -0.37
VPS52-213ENST00000461743 FAM186BQ8IYM0 893 aa12.76□□□□□ -0.37
VPS52-213ENST00000461743 ZNF461Q8TAF7 563 aa12.76□□□□□ -0.37
VPS52-213ENST00000461743 ERCC4Q92889 916 aaPredicted RBP12.76□□□□□ -0.37
VPS52-213ENST00000461743 SYAP1Q96A49 352 aaPredicted RBP12.76□□□□□ -0.37
VPS52-213ENST00000461743 CCDC127Q96BQ5 260 aa12.76□□□□□ -0.37
VPS52-213ENST00000461743 BORCS6Q96GS4 357 aa12.76□□□□□ -0.37
VPS52-213ENST00000461743 PHF7Q9BWX1 381 aaPredicted RBP12.76□□□□□ -0.37
VPS52-213ENST00000461743 NUP62CLQ9H1M0 184 aa12.76□□□□□ -0.37
VPS52-213ENST00000461743 VRTNQ9H8Y1 702 aa12.76□□□□□ -0.37
VPS52-213ENST00000461743 HSFX1Q9UBD0 423 aa12.76□□□□□ -0.37
VPS52-213ENST00000461743 AFF4Q9UHB7 1163 aaKnown RBP12.76□□□□□ -0.37
VPS52-213ENST00000461743 MYO10Q9HD67 2058 aa12.76□□□□□ -0.37
VPS52-213ENST00000461743 WDR27A2RRH5 827 aa12.75□□□□□ -0.37
VPS52-213ENST00000461743 ADAM12O43184 909 aa12.75□□□□□ -0.37
VPS52-213ENST00000461743 STX10O60499 249 aa12.75□□□□□ -0.37
VPS52-213ENST00000461743 HUS1O60921 280 aa12.75□□□□□ -0.37
VPS52-213ENST00000461743 XYLBO75191 536 aa12.75□□□□□ -0.37
VPS52-213ENST00000461743 AKAP3O75969 853 aa12.75□□□□□ -0.37
VPS52-213ENST00000461743 MBD3O95983 291 aa12.75□□□□□ -0.37
VPS52-213ENST00000461743 C8AP07357 584 aa12.75□□□□□ -0.37
VPS52-213ENST00000461743 CPB1P15086 417 aa12.75□□□□□ -0.37
VPS52-213ENST00000461743 ATF2P15336 505 aa12.75□□□□□ -0.37
VPS52-213ENST00000461743 GTF2H1P32780 548 aa12.75□□□□□ -0.37
VPS52-213ENST00000461743 CASP4P49662 377 aa12.75□□□□□ -0.37
VPS52-213ENST00000461743 VAMP7P51809 220 aa12.75□□□□□ -0.37
VPS52-213ENST00000461743 ZP2Q05996 745 aa12.75□□□□□ -0.37
VPS52-213ENST00000461743 ATAT1Q5SQI0 421 aa12.75□□□□□ -0.37
VPS52-213ENST00000461743 RSPO2Q6UXX9 243 aaPredicted RBP12.75□□□□□ -0.37
VPS52-213ENST00000461743 LIMS2Q7Z4I7 341 aa12.75□□□□□ -0.37
VPS52-213ENST00000461743 TCEAL8Q8IYN2 117 aa12.75□□□□□ -0.37
VPS52-213ENST00000461743 THEM5Q8N1Q8 247 aa12.75□□□□□ -0.37
VPS52-213ENST00000461743 TMEM130Q8N3G9 435 aa12.75□□□□□ -0.37
VPS52-213ENST00000461743 C2orf15Q8WU43 125 aaKnown RBP12.75□□□□□ -0.37
VPS52-213ENST00000461743 HPDLQ96IR7 371 aa12.75□□□□□ -0.37
VPS52-213ENST00000461743 CEP63Q96MT8 703 aa12.75□□□□□ -0.37
VPS52-213ENST00000461743 PRKD2Q9BZL6 878 aa12.75□□□□□ -0.37
VPS52-213ENST00000461743 NR2E1Q9Y466 385 aa12.75□□□□□ -0.37
VPS52-213ENST00000461743 C19orf67A6NJJ6 358 aa12.74□□□□□ -0.37
VPS52-213ENST00000461743 FAM163BP0C2L3 166 aa12.74□□□□□ -0.37
VPS52-213ENST00000461743 ELF1P32519 619 aa12.74□□□□□ -0.37
VPS52-213ENST00000461743 LHX1P48742 406 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms