RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 EGFL6Q8IUX8 553 aa6.53□□□□□ -1.36
VPS13D-202ENST00000460333 C4orf19Q8IY42 314 aa6.53□□□□□ -1.36
VPS13D-202ENST00000460333 RFFLQ8WZ73 363 aa6.53□□□□□ -1.36
VPS13D-202ENST00000460333 DUSP9Q99956 384 aaKnown RBP6.53□□□□□ -1.36
VPS13D-202ENST00000460333 DMAP1Q9NPF5 467 aaPredicted RBP6.53□□□□□ -1.36
VPS13D-202ENST00000460333 GCNT4Q9P109 453 aa6.53□□□□□ -1.36
VPS13D-202ENST00000460333 GABBR1Q9UBS5 961 aa6.53□□□□□ -1.36
VPS13D-202ENST00000460333 ORC6Q9Y5N6 252 aa6.53□□□□□ -1.36
VPS13D-202ENST00000460333 UBIAD1Q9Y5Z9 338 aa6.53□□□□□ -1.36
VPS13D-202ENST00000460333 SLC4A7Q9Y6M7 1214 aa6.53□□□□□ -1.36
VPS13D-202ENST00000460333 ASB14A6NK59 587 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 SFI1A8K8P3 1242 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 TRAPPC3O43617 180 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 SLITRK3O94933 977 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 TMPRSS15P98073 1019 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 ADCY1Q08828 1119 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 NAB2Q15742 525 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 CNGA3Q16281 694 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 DEFB115Q30KQ5 88 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 XKR3Q5GH77 459 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 CAPN12Q6ZSI9 719 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 KIAA2013Q8IYS2 634 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 LRRC43Q8N309 656 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 KIF2BQ8N4N8 673 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 DDHD1Q8NEL9 900 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 PYROXD1Q8WU10 500 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 PRPF31Q8WWY3 499 aaKnown RBP6.52□□□□□ -1.37
VPS13D-202ENST00000460333 ITFG2Q969R8 447 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 CCDC124Q96CT7 223 aaKnown RBP6.52□□□□□ -1.37
VPS13D-202ENST00000460333 DNAJC19Q96DA6 116 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 MAGEB18Q96M61 343 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 ZBED2Q9BTP6 218 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 SAYSD1Q9NPB0 183 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 ZNF302Q9NR11 478 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 CHMP2BQ9UQN3 213 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 TNS1Q9HBL0 1735 aaKnown RBP6.52□□□□□ -1.37
VPS13D-202ENST00000460333 SGK1O00141 431 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 CES2O00748 559 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 KIAA0391O15091 583 aaKnown RBP6.52□□□□□ -1.37
VPS13D-202ENST00000460333 SHOX2O60902 331 aaPredicted RBP6.52□□□□□ -1.37
VPS13D-202ENST00000460333 ATF7P17544 494 aaPredicted RBP6.52□□□□□ -1.37
VPS13D-202ENST00000460333 ITIH2P19823 946 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 SERPINB8P50452 374 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 KPNA2P52292 529 aaKnown RBP6.52□□□□□ -1.37
VPS13D-202ENST00000460333 PEX3P56589 373 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 PSMC1P62191 440 aaKnown RBP6.52□□□□□ -1.37
VPS13D-202ENST00000460333 TFDP1Q14186 410 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 CWF19L1Q69YN2 538 aaKnown RBP6.52□□□□□ -1.37
VPS13D-202ENST00000460333 SLFN12LQ6IEE8 588 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 KCNK18Q7Z418 384 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 PDIK1LQ8N165 341 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 XXYLT1Q8NBI6 393 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 CYP2W1Q8TAV3 490 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 TRPM4Q8TD43 1214 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 CASKIN2Q8WXE0 1202 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 KCNK16Q96T55 309 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 MMP19Q99542 508 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 MRPL46Q9H2W6 279 aaKnown RBP6.52□□□□□ -1.37
VPS13D-202ENST00000460333 ZNF112Q9UJU3 913 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 VAV3Q9UKW4 847 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 NR2E3Q9Y5X4 410 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 FRMPD4Q14CM0 1322 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 GPC4O75487 556 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 UBTFL6P0CB48 400 aaPredicted RBP6.52□□□□□ -1.37
VPS13D-202ENST00000460333 CETPP11597 493 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 RPS6KA2Q15349 733 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 SWSAP1Q6NVH7 229 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 CASC4Q6P4E1 433 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 CYFIP1Q7L576 1253 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 SLC26A7Q8TE54 656 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 POMGNT1Q8WZA1 660 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 CMTM5Q96DZ9 223 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 SIKE1Q9BRV8 207 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 RUSC1Q9BVN2 902 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 UBN1Q9NPG3 1134 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 C1orf112Q9NSG2 853 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 AMACRQ9UHK6 382 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 COMMD3-BMI1R4GMX3 469 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 TMEM120BA0PK00 339 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 A8MXQ7 604 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 HNRNPDLO14979 420 aaKnown RBP6.52□□□□□ -1.37
VPS13D-202ENST00000460333 DNAJC6O75061 913 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 FKBP6O75344 327 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 SKAP2O75563 359 aaPredicted RBP6.52□□□□□ -1.37
VPS13D-202ENST00000460333 EEF1B2P24534 225 aaKnown RBP6.52□□□□□ -1.37
VPS13D-202ENST00000460333 POLR2BP30876 1174 aaKnown RBP6.52□□□□□ -1.37
VPS13D-202ENST00000460333 SLC12A2P55011 1212 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 JAG1P78504 1218 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 SKIV2LQ15477 1246 aaKnown RBP6.52□□□□□ -1.37
VPS13D-202ENST00000460333 CHADLQ6NUI6 762 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 MREGQ8N565 214 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 RDH13Q8NBN7 331 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 NLGN2Q8NFZ4 835 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 ZNF507Q8TCN5 953 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 SCFD1Q8WVM8 642 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 ZFRQ96KR1 1074 aaKnown RBP6.52□□□□□ -1.37
VPS13D-202ENST00000460333 HSD17B14Q9BPX1 270 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 PABPC3Q9H361 631 aaKnown RBP6.52□□□□□ -1.37
VPS13D-202ENST00000460333 FAM53CQ9NYF3 392 aa6.52□□□□□ -1.37
VPS13D-202ENST00000460333 TOM1L1O75674 476 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms