RNA–Protein interactions for RNA: ENST00000457055.1

VPS41-209, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 465 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-209ENST00000457055 NRDE2Q9H7Z3 1164 aa5.9□□□□□ -1.46
VPS41-209ENST00000457055 INCENPQ9NQS7 918 aa5.9□□□□□ -1.46
VPS41-209ENST00000457055 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP5.9□□□□□ -1.46
VPS41-209ENST00000457055 STRIP2Q9ULQ0 834 aa5.9□□□□□ -1.46
VPS41-209ENST00000457055 HPCAL4Q9UM19 191 aa5.9□□□□□ -1.46
VPS41-209ENST00000457055 FGD6Q6ZV73 1430 aa5.9□□□□□ -1.47
VPS41-209ENST00000457055 PRXQ9BXM0 1461 aa5.9□□□□□ -1.47
VPS41-209ENST00000457055 ATP7AQ04656 1500 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 KDM5DQ9BY66 1539 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 PLXNC1O60486 1568 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 DIP2AQ14689 1571 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 A0A087X0B3 334 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 C7orf72A4D263 438 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 LACTBL1A8MY62 500 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 EIF3FO00303 357 aaPredicted RBP5.89□□□□□ -1.47
VPS41-209ENST00000457055 FUCA1P04066 466 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 NTRK1P04629 796 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 APOA4P06727 396 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 SLC3A2P08195 630 aaKnown RBP5.89□□□□□ -1.47
VPS41-209ENST00000457055 CYP2C8P10632 490 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 MAP2K2P36507 400 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 HSD17B2P37059 387 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 CLNS1AP54105 237 aaKnown RBP5.89□□□□□ -1.47
VPS41-209ENST00000457055 AK2P54819 239 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 SLC12A2P55011 1212 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 ADCY1Q08828 1119 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 SMAD4Q13485 552 aaKnown RBP5.89□□□□□ -1.47
VPS41-209ENST00000457055 RASGRF1Q13972 1273 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 PUM1Q14671 1186 aaKnown RBP eCLIP5.89□□□□□ -1.47
VPS41-209ENST00000457055 R3HDM1Q15032 1099 aaKnown RBP5.89□□□□□ -1.47
VPS41-209ENST00000457055 PPP2R5EQ16537 467 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 KRT71Q3SY84 523 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 SLC45A4Q5BKX6 768 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 ENOSF1Q7L5Y1 443 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 DGLUCYQ7Z3D6 616 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 NECAB2Q7Z6G3 386 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 ZNF761Q86XN6 746 aaPredicted RBP5.89□□□□□ -1.47
VPS41-209ENST00000457055 SPATA2LQ8IUW3 424 aaPredicted RBP5.89□□□□□ -1.47
VPS41-209ENST00000457055 TRIML2Q8N7C3 387 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 UTP15Q8TED0 518 aaKnown RBP5.89□□□□□ -1.47
VPS41-209ENST00000457055 NINJ1Q92982 152 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 RCC1LQ96I51 464 aaKnown RBP5.89□□□□□ -1.47
VPS41-209ENST00000457055 CNDP1Q96KN2 507 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 CEP295NLQ96MC4 621 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 TEX13BQ9BXU2 312 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 EDEM3Q9BZQ6 932 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 MRPL46Q9H2W6 279 aaKnown RBP5.89□□□□□ -1.47
VPS41-209ENST00000457055 TMPRSS5Q9H3S3 457 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 CLSTN2Q9H4D0 955 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 GRPEL1Q9HAV7 217 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 TMEM165Q9HC07 324 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 MAN1C1Q9NR34 630 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 SPATA6Q9NWH7 488 aaPredicted RBP5.89□□□□□ -1.47
VPS41-209ENST00000457055 SLC5A4Q9NY91 659 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 PRKAG3Q9UGI9 489 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 SIT1Q9Y3P8 196 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 JRKLQ9Y4A0 524 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 SNX8Q9Y5X2 465 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 PTCH2Q9Y6C5 1203 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 SOS1Q07889 1333 aaPredicted RBP5.89□□□□□ -1.47
VPS41-209ENST00000457055 CHD4Q14839 1912 aa5.89□□□□□ -1.47
VPS41-209ENST00000457055 PREX2Q70Z35 1606 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 CEP350Q5VT06 3117 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 B4DLN1 442 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 GOLGA6L19H0YKK7 550 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 AREL1O15033 823 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 NCAM2O15394 837 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 P4HA2O15460 535 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 SLC7A4O43246 635 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 STX6O43752 255 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 USO1O60763 962 aaKnown RBP5.88□□□□□ -1.47
VPS41-209ENST00000457055 DAB1O75553 588 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 DGKIO75912 1065 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 ABLIM3O94929 683 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 CPP00450 1065 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 C8BP07358 591 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 RPSAP08865 295 aaKnown RBP5.88□□□□□ -1.47
VPS41-209ENST00000457055 TOP1P11387 765 aaKnown RBP5.88□□□□□ -1.47
VPS41-209ENST00000457055 PBLDP30039 288 aaPredicted RBP5.88□□□□□ -1.47
VPS41-209ENST00000457055 ECE1P42892 770 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 GRK6P43250 576 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 TM4SF4P48230 202 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 RPS6KA3P51812 740 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 BLVRAP53004 296 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 C21orf58P58505 322 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 CYP4A11Q02928 519 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 RELQ04864 619 aaPredicted RBP5.88□□□□□ -1.47
VPS41-209ENST00000457055 ICA1Q05084 483 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 GABPB1Q06547 395 aaPredicted RBP5.88□□□□□ -1.47
VPS41-209ENST00000457055 IFIT5Q13325 482 aaKnown RBP5.88□□□□□ -1.47
VPS41-209ENST00000457055 GBX1Q14549 363 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 TBC1D25Q3MII6 688 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 ARHGAP29Q52LW3 1261 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 GPATCH4Q5T3I0 446 aaKnown RBP5.88□□□□□ -1.47
VPS41-209ENST00000457055 CCDC30Q5VVM6 783 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 CAPRIN2Q6IMN6 1127 aaKnown RBP5.88□□□□□ -1.47
VPS41-209ENST00000457055 ZNF771Q7L3S4 317 aaPredicted RBP5.88□□□□□ -1.47
VPS41-209ENST00000457055 PPP1R42Q7Z4L9 355 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 GALNTL5Q7Z4T8 443 aa5.88□□□□□ -1.47
VPS41-209ENST00000457055 DCP2Q8IU60 420 aaKnown RBP5.88□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms