RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 GEMIN4P57678 1058 aaKnown RBP20.25■□□□□ 0.83
HMGA1-205ENST00000447654 CLPPQ16740 277 aaPredicted RBP20.25■□□□□ 0.83
HMGA1-205ENST00000447654 LRRC6Q86X45 466 aa20.25■□□□□ 0.83
HMGA1-205ENST00000447654 TMPRSS6Q8IU80 811 aa20.25■□□□□ 0.83
HMGA1-205ENST00000447654 EBF3Q9H4W6 596 aa20.25■□□□□ 0.83
HMGA1-205ENST00000447654 RIOX1Q9H6W3 641 aa20.25■□□□□ 0.83
HMGA1-205ENST00000447654 OSGEPQ9NPF4 335 aa20.25■□□□□ 0.83
HMGA1-205ENST00000447654 TMEM260Q9NX78 707 aa20.25■□□□□ 0.83
HMGA1-205ENST00000447654 TRAF3IP3Q9Y228 551 aa20.25■□□□□ 0.83
HMGA1-205ENST00000447654 ZNF862O60290 1169 aa20.25■□□□□ 0.83
HMGA1-205ENST00000447654 ESRRAP11474 423 aaPredicted RBP20.25■□□□□ 0.83
HMGA1-205ENST00000447654 CETN2P41208 172 aa20.25■□□□□ 0.83
HMGA1-205ENST00000447654 GALK1P51570 392 aa20.25■□□□□ 0.83
HMGA1-205ENST00000447654 TBL3Q12788 808 aaKnown RBP20.25■□□□□ 0.83
HMGA1-205ENST00000447654 ZNF211Q13398 564 aaPredicted RBP20.25■□□□□ 0.83
HMGA1-205ENST00000447654 KRT25Q7Z3Z0 450 aa20.25■□□□□ 0.83
HMGA1-205ENST00000447654 RASSF3Q86WH2 238 aa20.25■□□□□ 0.83
HMGA1-205ENST00000447654 SFR1Q86XK3 245 aa20.25■□□□□ 0.83
HMGA1-205ENST00000447654 RAD54LQ92698 747 aa20.25■□□□□ 0.83
HMGA1-205ENST00000447654 SNF8Q96H20 258 aa20.25■□□□□ 0.83
HMGA1-205ENST00000447654 VPS50Q96JG6 964 aa20.25■□□□□ 0.83
HMGA1-205ENST00000447654 ZSWIM1Q9BR11 485 aa20.25■□□□□ 0.83
HMGA1-205ENST00000447654 FOXP3Q9BZS1 431 aa20.25■□□□□ 0.83
HMGA1-205ENST00000447654 RBM38Q9H0Z9 239 aaKnown RBP20.25■□□□□ 0.83
HMGA1-205ENST00000447654 NINJ2Q9NZG7 142 aa20.25■□□□□ 0.83
HMGA1-205ENST00000447654 NUB1Q9Y5A7 615 aa20.25■□□□□ 0.83
HMGA1-205ENST00000447654 ANKRD63C9JTQ0 380 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 EDIL3O43854 480 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 CSDE1O75534 798 aaKnown RBP20.24■□□□□ 0.83
HMGA1-205ENST00000447654 PDE5AO76074 875 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 PON1P27169 355 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 CRKP46108 304 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 VPS41P49754 854 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 KCTD19Q17RG1 926 aaPredicted RBP20.24■□□□□ 0.83
HMGA1-205ENST00000447654 TTBK2Q6IQ55 1244 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 KLHDC10Q6PID8 442 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 HHIPL2Q6UWX4 724 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 SKA1Q96BD8 255 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 COA7Q96BR5 231 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 ARHGEF38Q9NXL2 777 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 FADS3Q9Y5Q0 445 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 MATN2O00339 956 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 TP73O15350 636 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 SNHG28P0DPA3 235 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 IRX4P78413 519 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 CTTNQ14247 550 aaKnown RBP20.24■□□□□ 0.83
HMGA1-205ENST00000447654 RASA2Q15283 850 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 BCL2A1Q16548 175 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 KLHL35Q6PF15 583 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 OLFML1Q6UWY5 402 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 RBM44Q6ZP01 1051 aaKnown RBP20.24■□□□□ 0.83
HMGA1-205ENST00000447654 SNRNP27Q8WVK2 155 aaKnown RBP20.24■□□□□ 0.83
HMGA1-205ENST00000447654 TEKT1Q969V4 418 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 CDK5RAP3Q96JB5 506 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 TCHPQ9BT92 498 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 EIF2AQ9BY44 585 aaKnown RBP20.24■□□□□ 0.83
HMGA1-205ENST00000447654 GPCPD1Q9NPB8 672 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 PFDN4Q9NQP4 134 aa20.24■□□□□ 0.83
HMGA1-205ENST00000447654 GTPBP10A4D1E9 387 aaKnown RBP20.23■□□□□ 0.83
HMGA1-205ENST00000447654 ANKRD62A6NC57 917 aa20.23■□□□□ 0.83
HMGA1-205ENST00000447654 SORBS3O60504 671 aa20.23■□□□□ 0.83
HMGA1-205ENST00000447654 SPAG7O75391 227 aa20.23■□□□□ 0.83
HMGA1-205ENST00000447654 TGDSO95455 350 aa20.23■□□□□ 0.83
HMGA1-205ENST00000447654 AMPD1P23109 780 aa20.23■□□□□ 0.83
HMGA1-205ENST00000447654 STAT1P42224 750 aa20.23■□□□□ 0.83
HMGA1-205ENST00000447654 TCP10Q12799 353 aa20.23■□□□□ 0.83
HMGA1-205ENST00000447654 LETM2Q2VYF4 491 aa20.23■□□□□ 0.83
HMGA1-205ENST00000447654 ANKRD20A4Q4UJ75 823 aa20.23■□□□□ 0.83
HMGA1-205ENST00000447654 EAPPQ56P03 285 aaPredicted RBP20.23■□□□□ 0.83
HMGA1-205ENST00000447654 FAM26FQ5R3K3 315 aa20.23■□□□□ 0.83
HMGA1-205ENST00000447654 PATL1Q86TB9 770 aaKnown RBP20.23■□□□□ 0.83
HMGA1-205ENST00000447654 LARGE2Q8N3Y3 721 aa20.23■□□□□ 0.83
HMGA1-205ENST00000447654 PLEKHO2Q8TD55 490 aa20.23■□□□□ 0.83
HMGA1-205ENST00000447654 ZNF75CPQ92670 426 aaPredicted RBP20.23■□□□□ 0.83
HMGA1-205ENST00000447654 WNT8AQ9H1J5 351 aa20.23■□□□□ 0.83
HMGA1-205ENST00000447654 HDAC9Q9UKV0 1011 aa20.23■□□□□ 0.83
HMGA1-205ENST00000447654 EFR3BQ9Y2G0 817 aa20.23■□□□□ 0.83
HMGA1-205ENST00000447654 SH3PXD2BA1X283 911 aa20.22■□□□□ 0.83
HMGA1-205ENST00000447654 CFAP69A5D8W1 941 aa20.22■□□□□ 0.83
HMGA1-205ENST00000447654 G3V3G9 751 aa20.22■□□□□ 0.83
HMGA1-205ENST00000447654 PPP1R11O60927 126 aaPredicted RBP20.22■□□□□ 0.83
HMGA1-205ENST00000447654 DNAL1Q4LDG9 190 aa20.22■□□□□ 0.83
HMGA1-205ENST00000447654 SYCP2LQ5T4T6 812 aa20.22■□□□□ 0.83
HMGA1-205ENST00000447654 DCAF8Q5TAQ9 597 aa20.22■□□□□ 0.83
HMGA1-205ENST00000447654 TMEM53Q6P2H8 277 aa20.22■□□□□ 0.83
HMGA1-205ENST00000447654 KYAT3Q6YP21 454 aaKnown RBP20.22■□□□□ 0.83
HMGA1-205ENST00000447654 TRIM67Q6ZTA4 783 aa20.22■□□□□ 0.83
HMGA1-205ENST00000447654 DYMQ7RTS9 669 aa20.22■□□□□ 0.83
HMGA1-205ENST00000447654 BBOF1Q8ND07 529 aa20.22■□□□□ 0.83
HMGA1-205ENST00000447654 TRAIPQ9BWF2 469 aa20.22■□□□□ 0.83
HMGA1-205ENST00000447654 TRIM55Q9BYV6 548 aa20.22■□□□□ 0.83
HMGA1-205ENST00000447654 DDTLA6NHG4 134 aaPredicted RBP20.22■□□□□ 0.83
HMGA1-205ENST00000447654 CCNT1O60563 726 aaKnown RBP20.22■□□□□ 0.83
HMGA1-205ENST00000447654 SMIM18P0DKX4 95 aa20.22■□□□□ 0.83
HMGA1-205ENST00000447654 CETPP11597 493 aa20.22■□□□□ 0.83
HMGA1-205ENST00000447654 VCLP18206 1134 aa20.22■□□□□ 0.83
HMGA1-205ENST00000447654 FXR2P51116 673 aaKnown RBP eCLIP20.22■□□□□ 0.83
HMGA1-205ENST00000447654 CDK16Q00536 496 aa20.22■□□□□ 0.83
HMGA1-205ENST00000447654 ADCY1Q08828 1119 aa20.22■□□□□ 0.83
HMGA1-205ENST00000447654 COASYQ13057 564 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms