RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 HPS3Q969F9 1004 aa22.46■■□□□ 1.19
SDC1-205ENST00000447124 ZSWIM3Q96MP5 696 aa22.46■■□□□ 1.19
SDC1-205ENST00000447124 SLC27A5Q9Y2P5 690 aa22.46■■□□□ 1.19
SDC1-205ENST00000447124 GOLGA8IPA6NC78 632 aa22.45■■□□□ 1.18
SDC1-205ENST00000447124 GOLGA8JA6NMD2 632 aa22.45■■□□□ 1.18
SDC1-205ENST00000447124 CUTAO60888 179 aa22.45■■□□□ 1.18
SDC1-205ENST00000447124 MICAL2O94851 1124 aa22.45■■□□□ 1.18
SDC1-205ENST00000447124 CYP11A1P05108 521 aa22.45■■□□□ 1.18
SDC1-205ENST00000447124 ZSCAN22P10073 491 aaPredicted RBP22.45■■□□□ 1.18
SDC1-205ENST00000447124 GJA1P17302 382 aa22.45■■□□□ 1.18
SDC1-205ENST00000447124 PAX3P23760 479 aa22.45■■□□□ 1.18
SDC1-205ENST00000447124 PKP1Q13835 747 aa22.45■■□□□ 1.18
SDC1-205ENST00000447124 HSCBQ8IWL3 235 aa22.45■■□□□ 1.18
SDC1-205ENST00000447124 OR10T2Q8NGX3 314 aa22.45■■□□□ 1.18
SDC1-205ENST00000447124 FAM84AQ96KN4 292 aa22.45■■□□□ 1.18
SDC1-205ENST00000447124 CBWD1Q9BRT8 395 aa22.45■■□□□ 1.18
SDC1-205ENST00000447124 LRRC3Q9BY71 257 aa22.45■■□□□ 1.18
SDC1-205ENST00000447124 DNAJC25Q9H1X3 360 aa22.45■■□□□ 1.18
SDC1-205ENST00000447124 YIPF1Q9Y548 306 aa22.45■■□□□ 1.18
SDC1-205ENST00000447124 CYB561D2O14569 222 aa22.44■■□□□ 1.18
SDC1-205ENST00000447124 ZNF197O14709 1029 aa22.44■■□□□ 1.18
SDC1-205ENST00000447124 ECI2O75521 394 aa22.44■■□□□ 1.18
SDC1-205ENST00000447124 F13A1P00488 732 aa22.44■■□□□ 1.18
SDC1-205ENST00000447124 ODC1P11926 461 aa22.44■■□□□ 1.18
SDC1-205ENST00000447124 GARTP22102 1010 aa22.44■■□□□ 1.18
SDC1-205ENST00000447124 FCARP24071 287 aa22.44■■□□□ 1.18
SDC1-205ENST00000447124 EPHA5P54756 1037 aa22.44■■□□□ 1.18
SDC1-205ENST00000447124 STARD6P59095 220 aa22.44■■□□□ 1.18
SDC1-205ENST00000447124 SNW1Q13573 536 aaKnown RBP22.44■■□□□ 1.18
SDC1-205ENST00000447124 SLC44A4Q53GD3 710 aa22.44■■□□□ 1.18
SDC1-205ENST00000447124 FAM78AQ5JUQ0 283 aa22.44■■□□□ 1.18
SDC1-205ENST00000447124 CYP4A22Q5TCH4 519 aa22.44■■□□□ 1.18
SDC1-205ENST00000447124 IQCEQ6IPM2 695 aa22.44■■□□□ 1.18
SDC1-205ENST00000447124 PDZD4Q76G19 769 aaPredicted RBP22.44■■□□□ 1.18
SDC1-205ENST00000447124 BRSK2Q8IWQ3 736 aa22.44■■□□□ 1.18
SDC1-205ENST00000447124 CCDC65Q8IXS2 484 aa22.44■■□□□ 1.18
SDC1-205ENST00000447124 SYCP3Q8IZU3 236 aa22.44■■□□□ 1.18
SDC1-205ENST00000447124 TTC9BQ8N6N2 239 aa22.44■■□□□ 1.18
SDC1-205ENST00000447124 SPRYD3Q8NCJ5 442 aa22.44■■□□□ 1.18
SDC1-205ENST00000447124 DHX58Q96C10 678 aa22.44■■□□□ 1.18
SDC1-205ENST00000447124 TNMDQ9H2S6 317 aa22.44■■□□□ 1.18
SDC1-205ENST00000447124 PCIF1Q9H4Z3 704 aa22.44■■□□□ 1.18
SDC1-205ENST00000447124 MTMR11A4FU01 709 aa22.43■■□□□ 1.18
SDC1-205ENST00000447124 IL18RAPO95256 599 aa22.43■■□□□ 1.18
SDC1-205ENST00000447124 MYL4P12829 197 aa22.43■■□□□ 1.18
SDC1-205ENST00000447124 HOXD13P35453 343 aa22.43■■□□□ 1.18
SDC1-205ENST00000447124 TAF6P49848 677 aa22.43■■□□□ 1.18
SDC1-205ENST00000447124 CDR1P51861 262 aa22.43■■□□□ 1.18
SDC1-205ENST00000447124 ALCAMQ13740 583 aa22.43■■□□□ 1.18
SDC1-205ENST00000447124 WSCD1Q658N2 575 aa22.43■■□□□ 1.18
SDC1-205ENST00000447124 LRRTM3Q86VH5 581 aa22.43■■□□□ 1.18
SDC1-205ENST00000447124 FOXQ1Q9C009 403 aa22.43■■□□□ 1.18
SDC1-205ENST00000447124 TRIM9Q9C026 710 aa22.43■■□□□ 1.18
SDC1-205ENST00000447124 DLGAP2Q9P1A6 1054 aa22.43■■□□□ 1.18
SDC1-205ENST00000447124 MYH15Q9Y2K3 1946 aa22.43■■□□□ 1.18
SDC1-205ENST00000447124 PTPRZ1P23471 2315 aaPredicted RBP22.42■■□□□ 1.18
SDC1-205ENST00000447124 LRRN2O75325 713 aa22.42■■□□□ 1.18
SDC1-205ENST00000447124 SOAT2O75908 522 aa22.42■■□□□ 1.18
SDC1-205ENST00000447124 DCNP07585 359 aaKnown RBP22.42■■□□□ 1.18
SDC1-205ENST00000447124 GLULP15104 373 aa22.42■■□□□ 1.18
SDC1-205ENST00000447124 ARMCX5Q6P1M9 558 aa22.42■■□□□ 1.18
SDC1-205ENST00000447124 NT5DC4Q86YG4 428 aa22.42■■□□□ 1.18
SDC1-205ENST00000447124 ELMOD1Q8N336 334 aa22.42■■□□□ 1.18
SDC1-205ENST00000447124 CXorf38Q8TB03 319 aa22.42■■□□□ 1.18
SDC1-205ENST00000447124 PYM1Q9BRP8 204 aaKnown RBP22.42■■□□□ 1.18
SDC1-205ENST00000447124 TMEM206Q9H813 350 aa22.42■■□□□ 1.18
SDC1-205ENST00000447124 PCDHA7Q9UN72 937 aa22.42■■□□□ 1.18
SDC1-205ENST00000447124 TULP1O00294 542 aaPredicted RBP22.41■■□□□ 1.18
SDC1-205ENST00000447124 EXTL3O43909 919 aa22.41■■□□□ 1.18
SDC1-205ENST00000447124 LDHAP00338 332 aaKnown RBP22.41■■□□□ 1.18
SDC1-205ENST00000447124 TFAMQ00059 246 aaKnown RBP22.41■■□□□ 1.18
SDC1-205ENST00000447124 TMC8Q8IU68 726 aa22.41■■□□□ 1.18
SDC1-205ENST00000447124 C1orf127Q8N9H9 656 aa22.41■■□□□ 1.18
SDC1-205ENST00000447124 IQUBQ8NA54 791 aa22.41■■□□□ 1.18
SDC1-205ENST00000447124 SHKBP1Q8TBC3 707 aa22.41■■□□□ 1.18
SDC1-205ENST00000447124 ELSPBP1Q96BH3 223 aa22.41■■□□□ 1.18
SDC1-205ENST00000447124 ASB16Q96NS5 453 aa22.41■■□□□ 1.18
SDC1-205ENST00000447124 C7orf25Q9BPX7 421 aa22.41■■□□□ 1.18
SDC1-205ENST00000447124 DDX23Q9BUQ8 820 aaKnown RBP22.41■■□□□ 1.18
SDC1-205ENST00000447124 ZCWPW1Q9H0M4 648 aa22.41■■□□□ 1.18
SDC1-205ENST00000447124 CUEDC2Q9H467 287 aa22.41■■□□□ 1.18
SDC1-205ENST00000447124 ASAH2Q9NR71 780 aa22.41■■□□□ 1.18
SDC1-205ENST00000447124 SIT1Q9Y3P8 196 aa22.41■■□□□ 1.18
SDC1-205ENST00000447124 MTF2Q9Y483 593 aaPredicted RBP22.41■■□□□ 1.18
SDC1-205ENST00000447124 COL4A3Q01955 1670 aa22.4■■□□□ 1.18
SDC1-205ENST00000447124 KPNA7A9QM74 516 aa22.4■■□□□ 1.18
SDC1-205ENST00000447124 PROB1E7EW31 1015 aa22.4■■□□□ 1.18
SDC1-205ENST00000447124 RFX1P22670 979 aa22.4■■□□□ 1.18
SDC1-205ENST00000447124 CASP1P29466 404 aa22.4■■□□□ 1.18
SDC1-205ENST00000447124 ANGPT1Q15389 498 aa22.4■■□□□ 1.18
SDC1-205ENST00000447124 TEAD2Q15562 447 aa22.4■■□□□ 1.18
SDC1-205ENST00000447124 MLF2Q15773 248 aaPredicted RBP22.4■■□□□ 1.18
SDC1-205ENST00000447124 SLC39A12Q504Y0 691 aa22.4■■□□□ 1.18
SDC1-205ENST00000447124 CNNM4Q6P4Q7 775 aa22.4■■□□□ 1.18
SDC1-205ENST00000447124 DNAJB7Q7Z6W7 309 aaPredicted RBP22.4■■□□□ 1.18
SDC1-205ENST00000447124 LRRC27Q9C0I9 530 aa22.4■■□□□ 1.18
SDC1-205ENST00000447124 ZFP14Q9HCL3 533 aa22.4■■□□□ 1.18
SDC1-205ENST00000447124 PDE11AQ9HCR9 933 aa22.4■■□□□ 1.18
SDC1-205ENST00000447124 RBAKQ9NYW8 714 aaPredicted RBP22.4■■□□□ 1.18
SDC1-205ENST00000447124 DSEQ9UL01 958 aa22.4■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms