RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 MIS18BP1Q6P0N0 1132 aa12.53□□□□□ -0.4
MSH6-204ENST00000445503 MOV10L1Q9BXT6 1211 aaKnown RBP12.53□□□□□ -0.4
MSH6-204ENST00000445503 GTF2BQ00403 316 aa12.53□□□□□ -0.4
MSH6-204ENST00000445503 CENPCQ03188 943 aa12.53□□□□□ -0.4
MSH6-204ENST00000445503 PTK6Q13882 451 aa12.53□□□□□ -0.4
MSH6-204ENST00000445503 CCNG2Q16589 344 aa12.53□□□□□ -0.4
MSH6-204ENST00000445503 PPM1NQ8N819 430 aa12.53□□□□□ -0.4
MSH6-204ENST00000445503 TMEM161BQ8NDZ6 487 aa12.53□□□□□ -0.4
MSH6-204ENST00000445503 LMO3Q8TAP4 145 aa12.53□□□□□ -0.4
MSH6-204ENST00000445503 HELQQ8TDG4 1101 aa12.53□□□□□ -0.4
MSH6-204ENST00000445503 ATG4CQ96DT6 458 aa12.53□□□□□ -0.4
MSH6-204ENST00000445503 TTC25Q96NG3 672 aa12.53□□□□□ -0.4
MSH6-204ENST00000445503 OSBPL1AQ9BXW6 950 aa12.53□□□□□ -0.4
MSH6-204ENST00000445503 TRIM55Q9BYV6 548 aa12.53□□□□□ -0.4
MSH6-204ENST00000445503 SLC13A1Q9BZW2 595 aa12.53□□□□□ -0.4
MSH6-204ENST00000445503 SLC9A2Q9UBY0 812 aa12.53□□□□□ -0.4
MSH6-204ENST00000445503 DDX60Q8IY21 1712 aaKnown RBP12.53□□□□□ -0.4
MSH6-204ENST00000445503 H0YCG3 227 aa12.53□□□□□ -0.4
MSH6-204ENST00000445503 CST8O60676 142 aa12.53□□□□□ -0.4
MSH6-204ENST00000445503 UPP2O95045 317 aa12.53□□□□□ -0.4
MSH6-204ENST00000445503 POLR2BP30876 1174 aaKnown RBP12.53□□□□□ -0.4
MSH6-204ENST00000445503 NLRP11P59045 1033 aaKnown RBP12.53□□□□□ -0.4
MSH6-204ENST00000445503 RPL7AP62424 266 aaKnown RBP12.53□□□□□ -0.4
MSH6-204ENST00000445503 CUL2Q13617 745 aa12.53□□□□□ -0.4
MSH6-204ENST00000445503 KRT81Q14533 505 aa12.53□□□□□ -0.4
MSH6-204ENST00000445503 RANBP17Q9H2T7 1088 aaKnown RBP12.53□□□□□ -0.4
MSH6-204ENST00000445503 EPB41L4BQ9H329 900 aa12.53□□□□□ -0.4
MSH6-204ENST00000445503 C12orf65Q9H3J6 166 aaKnown RBP12.53□□□□□ -0.4
MSH6-204ENST00000445503 IVNS1ABPQ9Y6Y0 642 aa12.53□□□□□ -0.4
MSH6-204ENST00000445503 MYH7BA7E2Y1 1941 aa12.52□□□□□ -0.4
MSH6-204ENST00000445503 SPDYE2BA6NHP3 402 aa12.52□□□□□ -0.4
MSH6-204ENST00000445503 F8VP50 259 aa12.52□□□□□ -0.4
MSH6-204ENST00000445503 MCF2LO15068 1137 aa12.52□□□□□ -0.4
MSH6-204ENST00000445503 SPDYE6P0CI01 402 aa12.52□□□□□ -0.4
MSH6-204ENST00000445503 DESP17661 470 aa12.52□□□□□ -0.4
MSH6-204ENST00000445503 MUTP22033 750 aa12.52□□□□□ -0.4
MSH6-204ENST00000445503 RCOR2Q8IZ40 523 aa12.52□□□□□ -0.4
MSH6-204ENST00000445503 SEC14L1Q92503 715 aa12.52□□□□□ -0.4
MSH6-204ENST00000445503 FIZ1Q96SL8 496 aa12.52□□□□□ -0.4
MSH6-204ENST00000445503 CYTH2Q99418 400 aa12.52□□□□□ -0.4
MSH6-204ENST00000445503 JPH1Q9HDC5 661 aaPredicted RBP12.52□□□□□ -0.4
MSH6-204ENST00000445503 MARCOQ9UEW3 520 aaPredicted RBP12.52□□□□□ -0.4
MSH6-204ENST00000445503 HEY1Q9Y5J3 304 aa12.52□□□□□ -0.4
MSH6-204ENST00000445503 MYH1P12882 1939 aa12.52□□□□□ -0.4
MSH6-204ENST00000445503 MYH4Q9Y623 1939 aa12.52□□□□□ -0.4
MSH6-204ENST00000445503 ARHGAP42A6NI28 874 aa12.52□□□□□ -0.41
MSH6-204ENST00000445503 MGRN1O60291 552 aa12.52□□□□□ -0.41
MSH6-204ENST00000445503 DGAT1O75907 488 aa12.52□□□□□ -0.41
MSH6-204ENST00000445503 HAUS5O94927 633 aa12.52□□□□□ -0.41
MSH6-204ENST00000445503 RPA3P35244 121 aaPredicted RBP12.52□□□□□ -0.41
MSH6-204ENST00000445503 ARFIP2P53365 341 aa12.52□□□□□ -0.41
MSH6-204ENST00000445503 PSMC1P62191 440 aaKnown RBP12.52□□□□□ -0.41
MSH6-204ENST00000445503 NR1H3Q13133 447 aa12.52□□□□□ -0.41
MSH6-204ENST00000445503 FASTKD3Q14CZ7 662 aaKnown RBP12.52□□□□□ -0.41
MSH6-204ENST00000445503 VSTM1Q6UX27 236 aa12.52□□□□□ -0.41
MSH6-204ENST00000445503 MTDHQ86UE4 582 aaKnown RBP12.52□□□□□ -0.41
MSH6-204ENST00000445503 ADAM7Q9H2U9 754 aa12.52□□□□□ -0.41
MSH6-204ENST00000445503 FBXO40Q9UH90 709 aa12.52□□□□□ -0.41
MSH6-204ENST00000445503 ASTN2O75129 1339 aaPredicted RBP12.52□□□□□ -0.41
MSH6-204ENST00000445503 NOP56O00567 594 aaKnown RBP12.52□□□□□ -0.41
MSH6-204ENST00000445503 SMIM24O75264 130 aa12.52□□□□□ -0.41
MSH6-204ENST00000445503 EPHB2P29323 1055 aa12.52□□□□□ -0.41
MSH6-204ENST00000445503 ADSSP30520 456 aa12.52□□□□□ -0.41
MSH6-204ENST00000445503 IGBP1P78318 339 aa12.52□□□□□ -0.41
MSH6-204ENST00000445503 TAF1BQ53T94 588 aaPredicted RBP12.52□□□□□ -0.41
MSH6-204ENST00000445503 GPAT2Q6NUI2 795 aa12.52□□□□□ -0.41
MSH6-204ENST00000445503 C4orf19Q8IY42 314 aa12.52□□□□□ -0.41
MSH6-204ENST00000445503 CRYGNQ8WXF5 182 aa12.52□□□□□ -0.41
MSH6-204ENST00000445503 NLRP4Q96MN2 994 aa12.52□□□□□ -0.41
MSH6-204ENST00000445503 PDCD2LQ9BRP1 358 aa12.52□□□□□ -0.41
MSH6-204ENST00000445503 PPARGC1AQ9UBK2 798 aaKnown RBP12.52□□□□□ -0.41
MSH6-204ENST00000445503 LPXNO60711 386 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 CIB2O75838 187 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 LUC7L3O95232 432 aaKnown RBP12.51□□□□□ -0.41
MSH6-204ENST00000445503 C1orf228Q6PIY5 440 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 CCDC110Q8TBZ0 833 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 BSNDQ8WZ55 320 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 ANKEF1Q9NU02 776 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 TNNC2P02585 160 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 GPC3P51654 580 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 MPP2Q14168 576 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 NLRP9Q7RTR0 991 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 CCDC125Q86Z20 511 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 EMC1Q8N766 993 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 ATP11CQ8NB49 1132 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 TMC2Q8TDI7 906 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 ARAP2Q8WZ64 1704 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 MIEF2Q96C03 454 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 PSMC3IPQ9P2W1 217 aaPredicted RBP12.51□□□□□ -0.41
MSH6-204ENST00000445503 A0A1W2PPM1 405 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 EXTL3O43909 919 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 CFHP08603 1231 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 CTCFP49711 727 aaPredicted RBP12.51□□□□□ -0.41
MSH6-204ENST00000445503 TFDP1Q14186 410 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 PGM5Q15124 567 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 NFIL3Q16649 462 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 RSBN1LQ6PCB5 846 aaPredicted RBP12.51□□□□□ -0.41
MSH6-204ENST00000445503 EP400NLQ6ZTU2 488 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 ECHDC2Q86YB7 292 aa12.51□□□□□ -0.41
MSH6-204ENST00000445503 FAM71DQ8N9W8 422 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms