RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 ITGA11Q9UKX5 1188 aa18.53■□□□□ 0.56
LIME1-202ENST00000444951 FAN1Q9Y2M0 1017 aa18.53■□□□□ 0.56
LIME1-202ENST00000444951 NRP1O14786 923 aa18.52■□□□□ 0.56
LIME1-202ENST00000444951 FSCN2O14926 492 aa18.52■□□□□ 0.56
LIME1-202ENST00000444951 VNN1O95497 513 aa18.52■□□□□ 0.56
LIME1-202ENST00000444951 CST3P01034 146 aaPredicted RBP18.52■□□□□ 0.56
LIME1-202ENST00000444951 HLA-DRAP01903 254 aa18.52■□□□□ 0.56
LIME1-202ENST00000444951 ALDH2P05091 517 aa18.52■□□□□ 0.56
LIME1-202ENST00000444951 IGFBP6P24592 240 aaPredicted RBP18.52■□□□□ 0.56
LIME1-202ENST00000444951 RBP5P82980 135 aa18.52■□□□□ 0.56
LIME1-202ENST00000444951 NCOA4Q13772 614 aa18.52■□□□□ 0.56
LIME1-202ENST00000444951 ZACNQ401N2 412 aa18.52■□□□□ 0.56
LIME1-202ENST00000444951 PPP2R3CQ969Q6 453 aa18.52■□□□□ 0.56
LIME1-202ENST00000444951 PI4K2AQ9BTU6 479 aa18.52■□□□□ 0.56
LIME1-202ENST00000444951 TLE6Q9H808 572 aa18.52■□□□□ 0.56
LIME1-202ENST00000444951 IFNKQ9P0W0 207 aa18.52■□□□□ 0.56
LIME1-202ENST00000444951 ZNF318Q5VUA4 2279 aa18.51■□□□□ 0.55
LIME1-202ENST00000444951 N4BP1O75113 896 aaKnown RBP18.51■□□□□ 0.55
LIME1-202ENST00000444951 LRRN2O75325 713 aa18.51■□□□□ 0.55
LIME1-202ENST00000444951 GALTP07902 379 aa18.51■□□□□ 0.55
LIME1-202ENST00000444951 RPL9P32969 192 aaKnown RBP18.51■□□□□ 0.55
LIME1-202ENST00000444951 ALDH7A1P49419 539 aaKnown RBP18.51■□□□□ 0.55
LIME1-202ENST00000444951 MYL6P60660 151 aa18.51■□□□□ 0.55
LIME1-202ENST00000444951 UBXN1Q04323 297 aa18.51■□□□□ 0.55
LIME1-202ENST00000444951 UBE3AQ05086 875 aa18.51■□□□□ 0.55
LIME1-202ENST00000444951 PTPN21Q16825 1174 aa18.51■□□□□ 0.55
LIME1-202ENST00000444951 UPP1Q16831 310 aa18.51■□□□□ 0.55
LIME1-202ENST00000444951 FILIP1LQ4L180 1135 aa18.51■□□□□ 0.55
LIME1-202ENST00000444951 FKBP15Q5T1M5 1219 aa18.51■□□□□ 0.55
LIME1-202ENST00000444951 PLPP4Q5VZY2 271 aa18.51■□□□□ 0.55
LIME1-202ENST00000444951 KCNT2Q6UVM3 1135 aa18.51■□□□□ 0.55
LIME1-202ENST00000444951 C15orf39Q6ZRI6 1047 aa18.51■□□□□ 0.55
LIME1-202ENST00000444951 APTXQ7Z2E3 356 aaKnown RBP18.51■□□□□ 0.55
LIME1-202ENST00000444951 RNF135Q8IUD6 432 aa18.51■□□□□ 0.55
LIME1-202ENST00000444951 FBXL13Q8NEE6 735 aa18.51■□□□□ 0.55
LIME1-202ENST00000444951 MICAL1Q8TDZ2 1067 aa18.51■□□□□ 0.55
LIME1-202ENST00000444951 SEMA4DQ92854 862 aa18.51■□□□□ 0.55
LIME1-202ENST00000444951 DDX27Q96GQ7 796 aaKnown RBP18.51■□□□□ 0.55
LIME1-202ENST00000444951 UROC1Q96N76 676 aa18.51■□□□□ 0.55
LIME1-202ENST00000444951 ZNF558Q96NG5 402 aa18.51■□□□□ 0.55
LIME1-202ENST00000444951 NAP1L5Q96NT1 182 aaPredicted RBP18.51■□□□□ 0.55
LIME1-202ENST00000444951 AAASQ9NRG9 546 aa18.51■□□□□ 0.55
LIME1-202ENST00000444951 USP15Q9Y4E8 981 aaPredicted RBP18.51■□□□□ 0.55
LIME1-202ENST00000444951 ARIH1Q9Y4X5 557 aaPredicted RBP18.51■□□□□ 0.55
LIME1-202ENST00000444951 NUB1Q9Y5A7 615 aa18.51■□□□□ 0.55
LIME1-202ENST00000444951 LGALS16A8MUM7 142 aa18.5■□□□□ 0.55
LIME1-202ENST00000444951 TADA2AO75478 443 aa18.5■□□□□ 0.55
LIME1-202ENST00000444951 B3GAT3O94766 335 aa18.5■□□□□ 0.55
LIME1-202ENST00000444951 KIF4AO95239 1232 aa18.5■□□□□ 0.55
LIME1-202ENST00000444951 LAG3P18627 525 aa18.5■□□□□ 0.55
LIME1-202ENST00000444951 LRPAP1P30533 357 aa18.5■□□□□ 0.55
LIME1-202ENST00000444951 UBASH3AP57075 661 aa18.5■□□□□ 0.55
LIME1-202ENST00000444951 MCCD1P59942 119 aaPredicted RBP18.5■□□□□ 0.55
LIME1-202ENST00000444951 CETN1Q12798 172 aa18.5■□□□□ 0.55
LIME1-202ENST00000444951 LRMPQ12912 555 aa18.5■□□□□ 0.55
LIME1-202ENST00000444951 DUSP6Q16828 381 aa18.5■□□□□ 0.55
LIME1-202ENST00000444951 C3orf58Q8NDZ4 430 aa18.5■□□□□ 0.55
LIME1-202ENST00000444951 HPDLQ96IR7 371 aa18.5■□□□□ 0.55
LIME1-202ENST00000444951 PCMTD1Q96MG8 357 aaPredicted RBP18.5■□□□□ 0.55
LIME1-202ENST00000444951 TMEM175Q9BSA9 504 aa18.5■□□□□ 0.55
LIME1-202ENST00000444951 COLEC11Q9BWP8 271 aa18.5■□□□□ 0.55
LIME1-202ENST00000444951 GCNT4Q9P109 453 aa18.5■□□□□ 0.55
LIME1-202ENST00000444951 ANO9A1A5B4 782 aa18.49■□□□□ 0.55
LIME1-202ENST00000444951 LRRC10BA6NIK2 292 aa18.49■□□□□ 0.55
LIME1-202ENST00000444951 I3L4J1 428 aa18.49■□□□□ 0.55
LIME1-202ENST00000444951 PIRO00625 290 aa18.49■□□□□ 0.55
LIME1-202ENST00000444951 TEX33O43247 280 aa18.49■□□□□ 0.55
LIME1-202ENST00000444951 HOXD11P31277 338 aaPredicted RBP18.49■□□□□ 0.55
LIME1-202ENST00000444951 ZNF699Q32M78 642 aa18.49■□□□□ 0.55
LIME1-202ENST00000444951 SPOPLQ6IQ16 392 aa18.49■□□□□ 0.55
LIME1-202ENST00000444951 DCLRE1AQ6PJP8 1040 aa18.49■□□□□ 0.55
LIME1-202ENST00000444951 GBP6Q6ZN66 633 aa18.49■□□□□ 0.55
LIME1-202ENST00000444951 CCDC150Q8NCX0 1101 aa18.49■□□□□ 0.55
LIME1-202ENST00000444951 CXorf38Q8TB03 319 aa18.49■□□□□ 0.55
LIME1-202ENST00000444951 ZNF560Q96MR9 790 aa18.49■□□□□ 0.55
LIME1-202ENST00000444951 INTS2Q9H0H0 1204 aaKnown RBP18.49■□□□□ 0.55
LIME1-202ENST00000444951 RAB20Q9NX57 234 aa18.49■□□□□ 0.55
LIME1-202ENST00000444951 NXF1Q9UBU9 619 aaKnown RBP18.49■□□□□ 0.55
LIME1-202ENST00000444951 GTF3C5Q9Y5Q8 519 aaPredicted RBP18.49■□□□□ 0.55
LIME1-202ENST00000444951 GOLGA6L3A6NEY3 463 aa18.48■□□□□ 0.55
LIME1-202ENST00000444951 HIDE1A8MVS5 230 aa18.48■□□□□ 0.55
LIME1-202ENST00000444951 LOC730098B7Z3J9 87 aa18.48■□□□□ 0.55
LIME1-202ENST00000444951 SPTLC1O15269 473 aa18.48■□□□□ 0.55
LIME1-202ENST00000444951 SLC9A1P19634 815 aa18.48■□□□□ 0.55
LIME1-202ENST00000444951 BRCC3P46736 316 aa18.48■□□□□ 0.55
LIME1-202ENST00000444951 TAF6P49848 677 aa18.48■□□□□ 0.55
LIME1-202ENST00000444951 PLCB3Q01970 1234 aa18.48■□□□□ 0.55
LIME1-202ENST00000444951 MYO1EQ12965 1108 aa18.48■□□□□ 0.55
LIME1-202ENST00000444951 KCNC3Q14003 757 aa18.48■□□□□ 0.55
LIME1-202ENST00000444951 SV2CQ496J9 727 aa18.48■□□□□ 0.55
LIME1-202ENST00000444951 WDR44Q5JSH3 913 aa18.48■□□□□ 0.55
LIME1-202ENST00000444951 DSTYKQ6XUX3 929 aa18.48■□□□□ 0.55
LIME1-202ENST00000444951 HFE2Q6ZVN8 426 aa18.48■□□□□ 0.55
LIME1-202ENST00000444951 TMEM173Q86WV6 379 aaPredicted RBP18.48■□□□□ 0.55
LIME1-202ENST00000444951 BCL7CQ8WUZ0 217 aaPredicted RBP18.48■□□□□ 0.55
LIME1-202ENST00000444951 IMPG2Q9BZV3 1241 aa18.48■□□□□ 0.55
LIME1-202ENST00000444951 XPO4Q9C0E2 1151 aaKnown RBP18.48■□□□□ 0.55
LIME1-202ENST00000444951 RTN4Q9NQC3 1192 aaKnown RBP18.48■□□□□ 0.55
LIME1-202ENST00000444951 SPG21Q9NZD8 308 aa18.48■□□□□ 0.55
LIME1-202ENST00000444951 A0A1B0GTH6 734 aa18.47■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms