RNA–Protein interactions for RNA: ENST00000442234.5

LIG4-203, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 3,982 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-203ENST00000442234 LPAL2Q16609 132 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 SHROOM1Q2M3G4 852 aaPredicted RBP2.93□□□□□ -1.94
LIG4-203ENST00000442234 TRIM16LQ309B1 348 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 MYLK3Q32MK0 819 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 TWISTNBQ3B726 338 aaPredicted RBP2.93□□□□□ -1.94
LIG4-203ENST00000442234 FYB2Q5VWT5 728 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 FOXB2Q5VYV0 432 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 CCDC62Q6P9F0 684 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 IZUMO2Q6UXV1 221 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 SPATA31D4Q6ZUB0 917 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 GALNT7Q86SF2 657 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 RASSF3Q86WH2 238 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 CCDC25Q86WR0 208 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 TMEM139Q8IV31 216 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 SP8Q8IXZ3 490 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 RAVER1Q8IY67 606 aaKnown RBP2.93□□□□□ -1.94
LIG4-203ENST00000442234 NPLOC4Q8TAT6 608 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 TGFBRAP1Q8WUH2 860 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 BADQ92934 168 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 ERP27Q96DN0 273 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 ZNF333Q96JL9 665 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 HAPLN3Q96S86 360 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 KRT12Q99456 494 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 GPATCH1Q9BRR8 931 aaKnown RBP2.93□□□□□ -1.94
LIG4-203ENST00000442234 UBAC1Q9BSL1 405 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 ZNF341Q9BYN7 854 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 KLHL4Q9C0H6 718 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 PAIP1Q9H074 479 aaKnown RBP2.93□□□□□ -1.94
LIG4-203ENST00000442234 TUT1Q9H6E5 874 aaKnown RBP2.93□□□□□ -1.94
LIG4-203ENST00000442234 TMEM206Q9H813 350 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 PLGRKTQ9HBL7 147 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 CD209Q9NNX6 404 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 NDFIP2Q9NV92 336 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 FGFR1OP2Q9NVK5 253 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 NDE1Q9NXR1 346 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 PTPN22Q9Y2R2 807 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 PCDHB3Q9Y5E6 796 aa2.93□□□□□ -1.94
LIG4-203ENST00000442234 F5P12259 2224 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 XDHP47989 1333 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 TMEM114B3SHH9 223 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 KBTBD13C9JR72 458 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 PRDM1O75626 825 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 CLPTM1O96005 669 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 ALDH1A1P00352 501 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 UBL4AP11441 157 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 IL32P24001 234 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 TARSP26639 723 aaKnown RBP2.92□□□□□ -1.94
LIG4-203ENST00000442234 MARK3P27448 753 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 PRDX5P30044 214 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 PPARGP37231 505 aaPredicted RBP2.92□□□□□ -1.94
LIG4-203ENST00000442234 ETFBP38117 255 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 KRT6CP48668 564 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 CENPAP49450 140 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 KPNA1P52294 538 aaPredicted RBP2.92□□□□□ -1.94
LIG4-203ENST00000442234 GRIN1Q05586 938 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 RESTQ13127 1097 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 LAPTM4AQ15012 233 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 ACAP1Q15027 740 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 ZC2HC1CQ53FD0 456 aaPredicted RBP2.92□□□□□ -1.94
LIG4-203ENST00000442234 IGSF11Q5DX21 431 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 PPP6R3Q5H9R7 873 aaPredicted RBP2.92□□□□□ -1.94
LIG4-203ENST00000442234 WASHC2DQ5SRD0 308 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 C10orf62Q5T681 223 aaPredicted RBP2.92□□□□□ -1.94
LIG4-203ENST00000442234 AGBL2Q5U5Z8 902 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 CEP85Q6P2H3 762 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 C4orf22Q6V702 233 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 DSTYKQ6XUX3 929 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 RFPL4BQ6ZWI9 263 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 SATL1Q86VE3 508 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 OSTM1Q86WC4 334 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 RHOT2Q8IXI1 618 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 NUP93Q8N1F7 819 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 MMGT1Q8N4V1 131 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 LILRB1Q8NHL6 650 aaPredicted RBP2.92□□□□□ -1.94
LIG4-203ENST00000442234 TTC8Q8TAM2 541 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 ITPKCQ96DU7 683 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 AIFM3Q96NN9 605 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 FERMT1Q9BQL6 677 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 VPS16Q9H269 839 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 ARMC7Q9H6L4 198 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 CNNM2Q9H8M5 875 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 CLK4Q9HAZ1 481 aaKnown RBP2.92□□□□□ -1.94
LIG4-203ENST00000442234 STMN3Q9NZ72 180 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 EMC3Q9P0I2 261 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 DBF4Q9UBU7 674 aaPredicted RBP2.92□□□□□ -1.94
LIG4-203ENST00000442234 ZNF70Q9UC06 446 aaPredicted RBP2.92□□□□□ -1.94
LIG4-203ENST00000442234 ATP6V1HQ9UI12 483 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 MKL2Q9ULH7 1088 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 ANGPTL3Q9Y5C1 460 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 TRPM3Q9HCF6 1732 aaPredicted RBP2.92□□□□□ -1.94
LIG4-203ENST00000442234 CFAP54Q96N23 3096 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 ANO9A1A5B4 782 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 ANKRD34BA5PLL1 514 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 TCP11X1B4DZS4 312 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 E9PMD0 336 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 CCRL2O00421 344 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 FOXD2O60548 495 aaPredicted RBP2.92□□□□□ -1.94
LIG4-203ENST00000442234 PEX11AO75192 247 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 SEMA3DO95025 777 aa2.92□□□□□ -1.94
LIG4-203ENST00000442234 ESRRBO95718 433 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms