RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 LIASO43766 372 aa11.96□□□□□ -0.5
USP4-205ENST00000431357 VNN1O95497 513 aa11.96□□□□□ -0.5
USP4-205ENST00000431357 CALB1P05937 261 aa11.96□□□□□ -0.5
USP4-205ENST00000431357 ALADP13716 330 aa11.96□□□□□ -0.5
USP4-205ENST00000431357 PTPN7P35236 360 aa11.96□□□□□ -0.5
USP4-205ENST00000431357 AP3M2P53677 418 aa11.96□□□□□ -0.5
USP4-205ENST00000431357 NLRP11P59045 1033 aaKnown RBP11.96□□□□□ -0.5
USP4-205ENST00000431357 MKRN4PQ13434 485 aaPredicted RBP11.96□□□□□ -0.5
USP4-205ENST00000431357 BIRC2Q13490 618 aa11.96□□□□□ -0.5
USP4-205ENST00000431357 RASA2Q15283 850 aa11.96□□□□□ -0.5
USP4-205ENST00000431357 P3H1Q32P28 736 aa11.96□□□□□ -0.5
USP4-205ENST00000431357 GNPTABQ3T906 1256 aa11.96□□□□□ -0.5
USP4-205ENST00000431357 TMEM270Q6UE05 265 aa11.96□□□□□ -0.5
USP4-205ENST00000431357 PNMA8AQ86V59 439 aaPredicted RBP11.96□□□□□ -0.5
USP4-205ENST00000431357 NIM1KQ8IY84 436 aa11.96□□□□□ -0.5
USP4-205ENST00000431357 RBBP8NLQ8NC74 664 aaPredicted RBP11.96□□□□□ -0.5
USP4-205ENST00000431357 GDAP1Q8TB36 358 aa11.96□□□□□ -0.5
USP4-205ENST00000431357 KLHL29Q96CT2 875 aa11.96□□□□□ -0.5
USP4-205ENST00000431357 C9orf72Q96LT7 481 aa11.96□□□□□ -0.5
USP4-205ENST00000431357 ZNF277Q9NRM2 450 aaPredicted RBP11.96□□□□□ -0.5
USP4-205ENST00000431357 RBAKQ9NYW8 714 aaPredicted RBP11.96□□□□□ -0.5
USP4-205ENST00000431357 USTQ9Y2C2 406 aa11.96□□□□□ -0.5
USP4-205ENST00000431357 ARID2Q68CP9 1835 aa11.96□□□□□ -0.5
USP4-205ENST00000431357 PRPF4O43172 522 aaKnown RBP eCLIP11.95□□□□□ -0.5
USP4-205ENST00000431357 ATP5HO75947 161 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 CETPP11597 493 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 NAMPTP43490 491 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 POLGP54098 1239 aaPredicted RBP11.95□□□□□ -0.5
USP4-205ENST00000431357 ACTR2P61160 394 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 TAP1Q03518 808 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 SF3A3Q12874 501 aaKnown RBP eCLIP11.95□□□□□ -0.56e-7■■■■■ 26.8
USP4-205ENST00000431357 EMC2Q15006 297 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 LMBRD2Q68DH5 695 aaPredicted RBP11.95□□□□□ -0.5
USP4-205ENST00000431357 LLGL2Q6P1M3 1020 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 APOBEC3GQ9HC16 384 aaKnown RBP11.95□□□□□ -0.5
USP4-205ENST00000431357 ARHGEF3Q9NR81 526 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 TBK1Q9UHD2 729 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 SMG5Q9UPR3 1016 aaKnown RBP11.95□□□□□ -0.5
USP4-205ENST00000431357 EXOC1LA0A1B0GW35 172 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 TMEM191CA6NGB0 347 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 ATP2A1O14983 1001 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 LSM8O95777 96 aaKnown RBP11.95□□□□□ -0.5
USP4-205ENST00000431357 TMEM191BP0C7N4 346 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 SUPT20HL2P0C7V6 817 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 CD58P19256 250 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 TAC1P20366 129 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 MMP8P22894 467 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 MTMR2Q13614 643 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 MORF4L2Q15014 288 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 TMED2Q15363 201 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 SUPT20HL1Q3ZLR7 823 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 C2CD6Q53TS8 623 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 SPOPLQ6IQ16 392 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 RGS9BPQ6ZS82 235 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 TRABD2AQ86V40 505 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 PASD1Q8IV76 773 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 CCDC60Q8IWA6 550 aaPredicted RBP11.95□□□□□ -0.5
USP4-205ENST00000431357 ALLCQ8N6M5 410 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 DEPTORQ8TB45 409 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 ATG4CQ96DT6 458 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 PWWP2AQ96N64 755 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 SLITRK1Q96PX8 696 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 PITPNM3Q9BZ71 974 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 IMPG2Q9BZV3 1241 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 MLXIPLQ9NP71 852 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 SAYSD1Q9NPB0 183 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 MYOZ2Q9NPC6 264 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 DDX56Q9NY93 547 aaKnown RBP11.95□□□□□ -0.5
USP4-205ENST00000431357 ZNF148Q9UQR1 794 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 STARD13Q9Y3M8 1113 aa11.95□□□□□ -0.5
USP4-205ENST00000431357 SPATA31C2B4DYI2 1134 aa11.94□□□□□ -0.5
USP4-205ENST00000431357 K7ERI5 159 aa11.94□□□□□ -0.5
USP4-205ENST00000431357 IGF2BP3O00425 579 aaKnown RBP eCLIP11.94□□□□□ -0.5
USP4-205ENST00000431357 GH1P01241 217 aa11.94□□□□□ -0.5
USP4-205ENST00000431357 KRT1P04264 644 aa11.94□□□□□ -0.5
USP4-205ENST00000431357 ELF1P32519 619 aa11.94□□□□□ -0.5
USP4-205ENST00000431357 ACOT2P49753 483 aa11.94□□□□□ -0.5
USP4-205ENST00000431357 NOP14P78316 857 aaKnown RBP11.94□□□□□ -0.5
USP4-205ENST00000431357 SPARCL1Q14515 664 aa11.94□□□□□ -0.5
USP4-205ENST00000431357 E2F5Q15329 346 aa11.94□□□□□ -0.5
USP4-205ENST00000431357 CCDC142Q17RM4 750 aa11.94□□□□□ -0.5
USP4-205ENST00000431357 MTERF2Q49AM1 385 aa11.94□□□□□ -0.5
USP4-205ENST00000431357 FITM2Q8N6M3 262 aa11.94□□□□□ -0.5
USP4-205ENST00000431357 FBF1Q8TES7 1133 aa11.94□□□□□ -0.5
USP4-205ENST00000431357 TEPSINQ96N21 525 aa11.94□□□□□ -0.5
USP4-205ENST00000431357 MSTO1Q9BUK6 570 aa11.94□□□□□ -0.5
USP4-205ENST00000431357 PHACTR1Q9C0D0 580 aa11.94□□□□□ -0.5
USP4-205ENST00000431357 ZNF518BQ9C0D4 1074 aa11.94□□□□□ -0.5
USP4-205ENST00000431357 PORCNQ9H237 461 aa11.94□□□□□ -0.5
USP4-205ENST00000431357 TMEM134Q9H6X4 195 aa11.94□□□□□ -0.5
USP4-205ENST00000431357 EBF2Q9HAK2 575 aa11.94□□□□□ -0.5
USP4-205ENST00000431357 SLC24A2Q9UI40 661 aa11.94□□□□□ -0.5
USP4-205ENST00000431357 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.94□□□□□ -0.5
USP4-205ENST00000431357 A0A0B4J269 797 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 ALOX15BO15296 676 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 ASMTLO95671 621 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 CFHP08603 1231 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 CCNB1P14635 433 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 CCND1P24385 295 aa11.93□□□□□ -0.5
USP4-205ENST00000431357 GJC1P36383 396 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms