RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 TTC9BQ8N6N2 239 aa15.74■□□□□ 0.11
SDC1-204ENST00000429035 LARP4BQ92615 738 aaKnown RBP15.74■□□□□ 0.11
SDC1-204ENST00000429035 SENP8Q96LD8 212 aa15.74■□□□□ 0.11
SDC1-204ENST00000429035 NELL2Q99435 816 aa15.74■□□□□ 0.11
SDC1-204ENST00000429035 SEPT5Q99719 369 aaPredicted RBP15.74■□□□□ 0.11
SDC1-204ENST00000429035 ZNF334Q9HCZ1 680 aaPredicted RBP15.74■□□□□ 0.11
SDC1-204ENST00000429035 MAFFQ9ULX9 164 aa15.74■□□□□ 0.11
SDC1-204ENST00000429035 SLC27A5Q9Y2P5 690 aa15.74■□□□□ 0.11
SDC1-204ENST00000429035 TISP43B9A030 160 aa15.73■□□□□ 0.11
SDC1-204ENST00000429035 MAN2B1O00754 1011 aa15.73■□□□□ 0.11
SDC1-204ENST00000429035 MICAL2O94851 1124 aa15.73■□□□□ 0.11
SDC1-204ENST00000429035 OAZ2O95190 189 aa15.73■□□□□ 0.11
SDC1-204ENST00000429035 VNN2O95498 520 aa15.73■□□□□ 0.11
SDC1-204ENST00000429035 PIGRP01833 764 aa15.73■□□□□ 0.11
SDC1-204ENST00000429035 TYMPP19971 482 aa15.73■□□□□ 0.11
SDC1-204ENST00000429035 LONP1P36776 959 aaKnown RBP15.73■□□□□ 0.11
SDC1-204ENST00000429035 ACOT2P49753 483 aa15.73■□□□□ 0.11
SDC1-204ENST00000429035 ZBTB6Q15916 424 aa15.73■□□□□ 0.11
SDC1-204ENST00000429035 ZNF528Q3MIS6 628 aa15.73■□□□□ 0.11
SDC1-204ENST00000429035 ZC2HC1CQ53FD0 456 aaPredicted RBP15.73■□□□□ 0.11
SDC1-204ENST00000429035 STXBP5Q5T5C0 1151 aa15.73■□□□□ 0.11
SDC1-204ENST00000429035 SPATA1Q5VX52 437 aa15.73■□□□□ 0.11
SDC1-204ENST00000429035 ADALQ6DHV7 355 aa15.73■□□□□ 0.11
SDC1-204ENST00000429035 SLC39A4Q6P5W5 647 aa15.73■□□□□ 0.11
SDC1-204ENST00000429035 BRAPQ7Z569 592 aa15.73■□□□□ 0.11
SDC1-204ENST00000429035 TMC8Q8IU68 726 aa15.73■□□□□ 0.11
SDC1-204ENST00000429035 MAP4K3Q8IVH8 894 aa15.73■□□□□ 0.11
SDC1-204ENST00000429035 KRI1Q8N9T8 703 aaKnown RBP15.73■□□□□ 0.11
SDC1-204ENST00000429035 ATAD1Q8NBU5 361 aa15.73■□□□□ 0.11
SDC1-204ENST00000429035 CSGALNACT1Q8TDX6 532 aa15.73■□□□□ 0.11
SDC1-204ENST00000429035 FAM3CQ92520 227 aa15.73■□□□□ 0.11
SDC1-204ENST00000429035 RMDN1Q96DB5 314 aa15.73■□□□□ 0.11
SDC1-204ENST00000429035 OXCT2Q9BYC2 517 aaPredicted RBP15.73■□□□□ 0.11
SDC1-204ENST00000429035 DNAJC25Q9H1X3 360 aa15.73■□□□□ 0.11
SDC1-204ENST00000429035 SMG5Q9UPR3 1016 aaKnown RBP15.73■□□□□ 0.11
SDC1-204ENST00000429035 A0A0B4J269 797 aa15.72■□□□□ 0.11
SDC1-204ENST00000429035 DPYSL4O14531 572 aa15.72■□□□□ 0.11
SDC1-204ENST00000429035 FAM189A1O60320 539 aa15.72■□□□□ 0.11
SDC1-204ENST00000429035 RPS9P46781 194 aaKnown RBP15.72■□□□□ 0.11
SDC1-204ENST00000429035 ZNF131P52739 623 aa15.72■□□□□ 0.11
SDC1-204ENST00000429035 EPHA5P54756 1037 aa15.72■□□□□ 0.11
SDC1-204ENST00000429035 MTAPQ13126 283 aa15.72■□□□□ 0.11
SDC1-204ENST00000429035 MYBPC2Q14324 1141 aa15.72■□□□□ 0.11
SDC1-204ENST00000429035 MGAT5BQ3V5L5 792 aa15.72■□□□□ 0.11
SDC1-204ENST00000429035 SLC39A12Q504Y0 691 aa15.72■□□□□ 0.11
SDC1-204ENST00000429035 C9orf57Q5W0N0 161 aa15.72■□□□□ 0.11
SDC1-204ENST00000429035 DYMQ7RTS9 669 aa15.72■□□□□ 0.11
SDC1-204ENST00000429035 ERMP1Q7Z2K6 904 aa15.72■□□□□ 0.11
SDC1-204ENST00000429035 SFR1Q86XK3 245 aa15.72■□□□□ 0.11
SDC1-204ENST00000429035 CD302Q8IX05 232 aa15.72■□□□□ 0.11
SDC1-204ENST00000429035 TTC8Q8TAM2 541 aa15.72■□□□□ 0.11
SDC1-204ENST00000429035 CLDN23Q96B33 292 aa15.72■□□□□ 0.11
SDC1-204ENST00000429035 GCNAQ96QF7 691 aa15.72■□□□□ 0.11
SDC1-204ENST00000429035 PYM1Q9BRP8 204 aaKnown RBP15.72■□□□□ 0.11
SDC1-204ENST00000429035 ATXN3LQ9H3M9 355 aa15.72■□□□□ 0.11
SDC1-204ENST00000429035 ZSCAN32Q9NX65 697 aa15.72■□□□□ 0.11
SDC1-204ENST00000429035 CPSF3Q9UKF6 684 aaKnown RBP15.72■□□□□ 0.11
SDC1-204ENST00000429035 PCDHGA2Q9Y5H1 932 aa15.72■□□□□ 0.11
SDC1-204ENST00000429035 SLC38A8A6NNN8 435 aa15.71■□□□□ 0.11
SDC1-204ENST00000429035 ANKRD63C9JTQ0 380 aa15.71■□□□□ 0.11
SDC1-204ENST00000429035 CCNE1P24864 410 aa15.71■□□□□ 0.11
SDC1-204ENST00000429035 GABRR2P28476 465 aa15.71■□□□□ 0.11
SDC1-204ENST00000429035 KPNA1P52294 538 aaPredicted RBP15.71■□□□□ 0.11
SDC1-204ENST00000429035 LILRA4P59901 499 aa15.71■□□□□ 0.11
SDC1-204ENST00000429035 CYP4F8P98187 520 aa15.71■□□□□ 0.11
SDC1-204ENST00000429035 GPR17Q13304 367 aa15.71■□□□□ 0.11
SDC1-204ENST00000429035 VEPH1Q14D04 833 aa15.71■□□□□ 0.11
SDC1-204ENST00000429035 TAF12Q16514 161 aa15.71■□□□□ 0.11
SDC1-204ENST00000429035 ARHGAP15Q53QZ3 475 aa15.71■□□□□ 0.11
SDC1-204ENST00000429035 GPR158Q5T848 1215 aa15.71■□□□□ 0.11
SDC1-204ENST00000429035 CENPPQ6IPU0 288 aa15.71■□□□□ 0.11
SDC1-204ENST00000429035 DGLUCYQ7Z3D6 616 aa15.71■□□□□ 0.11
SDC1-204ENST00000429035 METTL23Q86XA0 190 aa15.71■□□□□ 0.11
SDC1-204ENST00000429035 SUMF1Q8NBK3 374 aa15.71■□□□□ 0.11
SDC1-204ENST00000429035 OR10T2Q8NGX3 314 aa15.71■□□□□ 0.11
SDC1-204ENST00000429035 NOC3LQ8WTT2 800 aaKnown RBP15.71■□□□□ 0.11
SDC1-204ENST00000429035 POMGNT1Q8WZA1 660 aa15.71■□□□□ 0.11
SDC1-204ENST00000429035 SECISBP2LQ93073 1101 aaKnown RBP15.71■□□□□ 0.11
SDC1-204ENST00000429035 LPIN3Q9BQK8 851 aa15.71■□□□□ 0.11
SDC1-204ENST00000429035 GPR88Q9GZN0 384 aa15.71■□□□□ 0.11
SDC1-204ENST00000429035 IKZF4Q9H2S9 585 aa15.71■□□□□ 0.11
SDC1-204ENST00000429035 PRMT8Q9NR22 394 aaPredicted RBP15.71■□□□□ 0.11
SDC1-204ENST00000429035 AGO2Q9UKV8 859 aaKnown RBP15.71■□□□□ 0.11
SDC1-204ENST00000429035 GPR179Q6PRD1 2367 aa15.71■□□□□ 0.11
SDC1-204ENST00000429035 DENND4CQ5VZ89 1909 aa15.7■□□□□ 0.1
SDC1-204ENST00000429035 OBSL1O75147 1896 aa15.7■□□□□ 0.1
SDC1-204ENST00000429035 DCHS1Q96JQ0 3298 aa15.7■□□□□ 0.1
SDC1-204ENST00000429035 SHISA7A6NL88 538 aa15.7■□□□□ 0.1
SDC1-204ENST00000429035 SCP2P22307 547 aa15.7■□□□□ 0.1
SDC1-204ENST00000429035 ABCD1P33897 745 aa15.7■□□□□ 0.1
SDC1-204ENST00000429035 TXLNAP40222 546 aa15.7■□□□□ 0.1
SDC1-204ENST00000429035 SOX9P48436 509 aa15.7■□□□□ 0.1
SDC1-204ENST00000429035 TAF6P49848 677 aa15.7■□□□□ 0.1
SDC1-204ENST00000429035 GTF2BQ00403 316 aa15.7■□□□□ 0.1
SDC1-204ENST00000429035 PPP2R5DQ14738 602 aa15.7■□□□□ 0.1
SDC1-204ENST00000429035 LPAL2Q16609 132 aa15.7■□□□□ 0.1
SDC1-204ENST00000429035 ITIH5Q86UX2 942 aa15.7■□□□□ 0.1
SDC1-204ENST00000429035 MFSD6LQ8IWD5 586 aa15.7■□□□□ 0.1
SDC1-204ENST00000429035 RSPRY1Q96DX4 576 aa15.7■□□□□ 0.1
SDC1-204ENST00000429035 TSPAN18Q96SJ8 248 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms