RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 PLEKP08567 350 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 HNRNPA1P09651 372 aaKnown RBP eCLIP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 TNFRSF4P43489 277 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 CDH8P55286 799 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 MARSP56192 900 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 BCAR1P56945 870 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 ARG2P78540 354 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 PTPN11Q06124 597 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 SMTNL2Q2TAL5 461 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 SUSD4Q5VX71 490 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 LCTLQ6UWM7 567 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 RSPO2Q6UXX9 243 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 P4HA3Q7Z4N8 544 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 SRGAP1Q7Z6B7 1085 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 PTAR1Q7Z6K3 402 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 FBXO16Q8IX29 292 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 SYCP3Q8IZU3 236 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 ST13P5Q8NFI4 369 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 TRIM58Q8NG06 486 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 MAML1Q92585 1016 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 FBXW5Q969U6 566 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 DDX27Q96GQ7 796 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 LRRC2Q9BYS8 371 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 NGBQ9NPG2 151 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 UBN1Q9NPG3 1134 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 ST7Q9NRC1 585 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 MIS18AQ9NYP9 233 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 ZSWIM5Q9P217 1185 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 METP08581 1390 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 USP9YO00507 2555 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 TARBP1Q13395 1621 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 TRANK1O15050 2925 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 TCRBV21S2A2A0A5A6 115 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 ANKRD62A6NC57 917 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 CCDC69A6NI79 296 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 WFS1O76024 890 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 PDGFBP01127 241 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 AHSGP02765 367 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 IRF1P10914 325 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 TUFMP49411 452 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 AP2B1P63010 937 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 DMC1Q14565 340 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 PUM3Q15397 648 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 CCDC184Q52MB2 194 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 WIPI1Q5MNZ9 446 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 ZCCHC8Q6NZY4 707 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 MIS18BP1Q6P0N0 1132 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 KLHL35Q6PF15 583 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 SPNS3Q6ZMD2 512 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 GRASPQ7Z6J2 395 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 PLD6Q8N2A8 252 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 BBS5Q8N3I7 341 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 MSL3Q8N5Y2 521 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 ZNF513Q8N8E2 541 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 MIGA1Q8NAN2 632 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 DNERQ8NFT8 737 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 UBA3Q8TBC4 463 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 ATG4CQ96DT6 458 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 MPHOSPH9Q99550 1183 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 MXD3Q9BW11 206 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 SMARCAD1Q9H4L7 1026 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 LUZP4Q9P127 313 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 RCOR3Q9P2K3 495 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 SWAP70Q9UH65 585 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 MBD1Q9UIS9 605 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 SLC5A6Q9Y289 635 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 SLC12A7Q9Y666 1083 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 ADGRA3Q8IWK6 1321 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 IGF2RP11717 2491 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 TRAV19A0A0A6YYK7 116 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 FAM47E-STBD1D6RA91 191 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 CDC40O60508 579 aaKnown RBP eCLIP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 B3GAT3O94766 335 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 EGFP01133 1207 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 MPOP05164 745 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 CES1P23141 567 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 MGAT1P26572 445 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 RPL10AP62906 217 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 GPC5P78333 572 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 NFKB2Q00653 900 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 LTBQ06643 244 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 CAPRIN1Q14444 709 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 CCNG2Q16589 344 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 TSR1Q2NL82 804 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 MIDNQ504T8 468 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 ANKRD40Q6AI12 368 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 TTBK2Q6IQ55 1244 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 TTC23LQ6PF05 361 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 MRGPRGQ86SM5 289 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 FJX1Q86VR8 437 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 TMPRSS12Q86WS5 348 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 GPIHBP1Q8IV16 184 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 NAXDQ8IW45 347 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 ATG16L2Q8NAA4 619 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 GAB3Q8WWW8 586 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 CELF1Q92879 486 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 MR1Q95460 341 aa2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 ZNF396Q96N95 335 aaPredicted RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 MOV10L1Q9BXT6 1211 aaKnown RBP2.95□□□□□ -1.94
CCDC88A-205ENST00000426576 POLDIP3Q9BY77 421 aaKnown RBP2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms