RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 COL5A3P25940 1745 aaPredicted RBP11.3□□□□□ -0.6
USP54-204ENST00000422491 MAGEC1O60732 1142 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 DLDP09622 509 aaKnown RBP11.29□□□□□ -0.6
USP54-204ENST00000422491 SPATA31D3P0C874 917 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 PGM1P36871 562 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 MYBPC3Q14896 1274 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 EFHC2Q5JST6 749 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 DPY19L2Q6NUT2 758 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 SLC30A10Q6XR72 485 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 CAPN12Q6ZSI9 719 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 SPATA31D4Q6ZUB0 917 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 TTC7BQ86TV6 843 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 SYCP3Q8IZU3 236 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 PPM1KQ8N3J5 372 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 SMC1BQ8NDV3 1235 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 STKLD1Q8NE28 680 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 MRRFQ96E11 262 aaKnown RBP11.29□□□□□ -0.6
USP54-204ENST00000422491 DYDC2Q96IM9 177 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 CENPKQ9BS16 269 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 TMEM117Q9H0C3 514 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 PCIF1Q9H4Z3 704 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 VPS37BQ9H9H4 285 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 IL1RAPL1Q9NZN1 696 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 TMCO1Q9UM00 188 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 MTO1Q9Y2Z2 717 aaKnown RBP11.29□□□□□ -0.6
USP54-204ENST00000422491 MYH11P35749 1972 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 GREB1LQ9C091 1923 aaPredicted RBP11.29□□□□□ -0.6
USP54-204ENST00000422491 ALOX15BO15296 676 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 PMM2O15305 246 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 RNASEH1O60930 286 aaKnown RBP11.29□□□□□ -0.6
USP54-204ENST00000422491 TGDSO95455 350 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 MXI1P50539 228 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 CDC16Q13042 620 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 CLEC16AQ2KHT3 1053 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 CCDC62Q6P9F0 684 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 MARK2Q7KZI7 788 aaKnown RBP11.29□□□□□ -0.6
USP54-204ENST00000422491 LRRC6Q86X45 466 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 TCP10LQ8TDR4 215 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 MZB1Q8WU39 189 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 TMEM174Q8WUU8 243 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 PHACTR1Q9C0D0 580 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 FHDC1Q9C0D6 1143 aaPredicted RBP11.29□□□□□ -0.6
USP54-204ENST00000422491 NYXQ9GZU5 481 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 C12orf65Q9H3J6 166 aaKnown RBP11.29□□□□□ -0.6
USP54-204ENST00000422491 SUGT1Q9Y2Z0 365 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.29□□□□□ -0.6
USP54-204ENST00000422491 NFASCO94856 1347 aa11.29□□□□□ -0.6
USP54-204ENST00000422491 TM9SF1O15321 606 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 PABPC4LP0CB38 370 aaKnown RBP11.28□□□□□ -0.6
USP54-204ENST00000422491 DLGAP5Q15398 846 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 RFX8Q6ZV50 586 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 OTOP1Q7RTM1 612 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 GSTA5Q7RTV2 222 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 LCA5Q86VQ0 697 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 MYLK4Q86YV6 388 aaPredicted RBP11.28□□□□□ -0.6
USP54-204ENST00000422491 ARHGAP24Q8N264 748 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 ZSWIM2Q8NEG5 633 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 SEMA4DQ92854 862 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 FAM161BQ96MY7 647 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 FNBP1Q96RU3 617 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 TSSK1BQ9BXA7 367 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 AVENQ9NQS1 362 aaPredicted RBP11.28□□□□□ -0.6
USP54-204ENST00000422491 WRAP73Q9P2S5 460 aaPredicted RBP11.28□□□□□ -0.6
USP54-204ENST00000422491 SLC17A7Q9P2U7 560 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 DNAJB4Q9UDY4 337 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 XIRP1Q702N8 1843 aaKnown RBP11.28□□□□□ -0.6
USP54-204ENST00000422491 RBBP6Q7Z6E9 1792 aaKnown RBP11.28□□□□□ -0.6
USP54-204ENST00000422491 IGLV3-22A0A075B6J6 115 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 ZSCAN5DPP0CG00 497 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 IMPDH2P12268 514 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 ETS2P15036 469 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 SHMT1P34896 483 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 MFAP3P55082 362 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 GEMIN4P57678 1058 aaKnown RBP11.28□□□□□ -0.6
USP54-204ENST00000422491 GPX6P59796 221 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 ZBTB16Q05516 673 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 PICALMQ13492 652 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 NFIXQ14938 502 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 C15orf52Q6ZUT6 534 aaKnown RBP11.28□□□□□ -0.6
USP54-204ENST00000422491 NET1Q7Z628 596 aaPredicted RBP11.28□□□□□ -0.6
USP54-204ENST00000422491 ZBED8Q8IZ13 594 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 DAW1Q8N136 415 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 BANPQ8N9N5 519 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 HELQQ8TDG4 1101 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 OLFM3Q96PB7 478 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 PANX3Q96QZ0 392 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 CBWD1Q9BRT8 395 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 PREBQ9HCU5 417 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 FETUBQ9UGM5 382 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 G3BP2Q9UN86 482 aaKnown RBP11.28□□□□□ -0.6
USP54-204ENST00000422491 C2orf71A6NGG8 1288 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 FCHO1O14526 889 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 FOSP01100 380 aaPredicted RBP11.28□□□□□ -0.6
USP54-204ENST00000422491 PIM1P11309 404 aaPredicted RBP11.28□□□□□ -0.6
USP54-204ENST00000422491 UNGP13051 313 aaPredicted RBP11.28□□□□□ -0.6
USP54-204ENST00000422491 HNRNPDQ14103 355 aaKnown RBP11.28□□□□□ -0.6
USP54-204ENST00000422491 EFTUD2Q15029 972 aaKnown RBP eCLIP11.28□□□□□ -0.6
USP54-204ENST00000422491 RIPOR1Q6ZS17 1223 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 MCOLN2Q8IZK6 566 aa11.28□□□□□ -0.6
USP54-204ENST00000422491 FBXO27Q8NI29 283 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms