RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 LRPAP1P30533 357 aa8.81□□□□□ -1
VIM-202ENST00000421459 AARSP49588 968 aaKnown RBP eCLIP8.81□□□□□ -1
VIM-202ENST00000421459 HMGN5P82970 282 aaKnown RBP8.81□□□□□ -1
VIM-202ENST00000421459 GPR17Q13304 367 aa8.81□□□□□ -1
VIM-202ENST00000421459 SIM2Q14190 667 aaPredicted RBP8.81□□□□□ -1
VIM-202ENST00000421459 GPR158Q5T848 1215 aa8.81□□□□□ -1
VIM-202ENST00000421459 SCARA3Q6AZY7 606 aa8.81□□□□□ -1
VIM-202ENST00000421459 MCTP1Q6DN14 999 aa8.81□□□□□ -1
VIM-202ENST00000421459 JADE1Q6IE81 842 aa8.81□□□□□ -1
VIM-202ENST00000421459 CENPPQ6IPU0 288 aa8.81□□□□□ -1
VIM-202ENST00000421459 SLC39A4Q6P5W5 647 aa8.81□□□□□ -1
VIM-202ENST00000421459 PKN3Q6P5Z2 889 aa8.81□□□□□ -1
VIM-202ENST00000421459 ZPBP2Q6X784 338 aa8.81□□□□□ -1
VIM-202ENST00000421459 HAUS6Q7Z4H7 955 aa8.81□□□□□ -1
VIM-202ENST00000421459 DNAJB7Q7Z6W7 309 aaPredicted RBP8.81□□□□□ -1
VIM-202ENST00000421459 USP37Q86T82 979 aa8.81□□□□□ -1
VIM-202ENST00000421459 STKLD1Q8NE28 680 aa8.81□□□□□ -1
VIM-202ENST00000421459 OR10T2Q8NGX3 314 aa8.81□□□□□ -1
VIM-202ENST00000421459 GIPC2Q8TF65 315 aa8.81□□□□□ -1
VIM-202ENST00000421459 DEPDC1BQ8WUY9 529 aa8.81□□□□□ -1
VIM-202ENST00000421459 SECISBP2LQ93073 1101 aaKnown RBP8.81□□□□□ -1
VIM-202ENST00000421459 BICD1Q96G01 975 aa8.81□□□□□ -1
VIM-202ENST00000421459 SENP8Q96LD8 212 aa8.81□□□□□ -1
VIM-202ENST00000421459 ATXN3LQ9H3M9 355 aa8.81□□□□□ -1
VIM-202ENST00000421459 COL4A2P08572 1712 aa8.8□□□□□ -1
VIM-202ENST00000421459 MIA3Q5JRA6 1907 aa8.8□□□□□ -1
VIM-202ENST00000421459 FANCMQ8IYD8 2048 aa8.8□□□□□ -1
VIM-202ENST00000421459 NCOR2Q9Y618 2525 aa8.8□□□□□ -1
VIM-202ENST00000421459 PRR5-ARHGAP8B1AHC4 643 aa8.8□□□□□ -1
VIM-202ENST00000421459 ANKRD63C9JTQ0 380 aa8.8□□□□□ -1
VIM-202ENST00000421459 TULP1O00294 542 aaPredicted RBP8.8□□□□□ -1
VIM-202ENST00000421459 CHADO15335 359 aa8.8□□□□□ -1
VIM-202ENST00000421459 EXTL3O43909 919 aa8.8□□□□□ -1
VIM-202ENST00000421459 NFICP08651 508 aa8.8□□□□□ -1
VIM-202ENST00000421459 KCNA4P22459 653 aa8.8□□□□□ -1
VIM-202ENST00000421459 GABRR2P28476 465 aa8.8□□□□□ -1
VIM-202ENST00000421459 PRPHP41219 470 aa8.8□□□□□ -1
VIM-202ENST00000421459 ALDH1A3P47895 512 aa8.8□□□□□ -1
VIM-202ENST00000421459 CCR3P51677 355 aa8.8□□□□□ -1
VIM-202ENST00000421459 SMTNP53814 917 aa8.8□□□□□ -1
VIM-202ENST00000421459 EPHB3P54753 998 aa8.8□□□□□ -1
VIM-202ENST00000421459 NRLP54845 237 aa8.8□□□□□ -1
VIM-202ENST00000421459 NCKAP1LP55160 1127 aa8.8□□□□□ -1
VIM-202ENST00000421459 LILRA4P59901 499 aa8.8□□□□□ -1
VIM-202ENST00000421459 ARHGAP8P85298 464 aa8.8□□□□□ -1
VIM-202ENST00000421459 ATP2C1P98194 919 aaPredicted RBP8.8□□□□□ -1
VIM-202ENST00000421459 LMNB2Q03252 620 aa8.8□□□□□ -1
VIM-202ENST00000421459 GRIN1Q05586 938 aa8.8□□□□□ -1
VIM-202ENST00000421459 PPP2R3AQ06190 1150 aa8.8□□□□□ -1
VIM-202ENST00000421459 FCHO2Q0JRZ9 810 aa8.8□□□□□ -1
VIM-202ENST00000421459 TMEM119Q4V9L6 283 aa8.8□□□□□ -1
VIM-202ENST00000421459 SLC39A12Q504Y0 691 aa8.8□□□□□ -1
VIM-202ENST00000421459 HYIQ5T013 277 aa8.8□□□□□ -1
VIM-202ENST00000421459 LAIR1Q6GTX8 287 aa8.8□□□□□ -1
VIM-202ENST00000421459 OVOS1Q6IE37 1185 aa8.8□□□□□ -1
VIM-202ENST00000421459 MAMSTRQ6ZN01 415 aa8.8□□□□□ -1
VIM-202ENST00000421459 LRRTM3Q86VH5 581 aa8.8□□□□□ -1
VIM-202ENST00000421459 GPR161Q8N6U8 529 aaKnown RBP8.8□□□□□ -1
VIM-202ENST00000421459 CELF5Q8N6W0 485 aaKnown RBP8.8□□□□□ -1
VIM-202ENST00000421459 BORCS6Q96GS4 357 aa8.8□□□□□ -1
VIM-202ENST00000421459 FAM84AQ96KN4 292 aa8.8□□□□□ -1
VIM-202ENST00000421459 ZSCAN31Q96LW9 406 aaPredicted RBP8.8□□□□□ -1
VIM-202ENST00000421459 SEPT5Q99719 369 aaPredicted RBP8.8□□□□□ -1
VIM-202ENST00000421459 REEP2Q9BRK0 252 aa8.8□□□□□ -1
VIM-202ENST00000421459 FAM126AQ9BYI3 521 aaPredicted RBP8.8□□□□□ -1
VIM-202ENST00000421459 RAB34Q9BZG1 259 aa8.8□□□□□ -1
VIM-202ENST00000421459 C17orf75Q9HAS0 396 aa8.8□□□□□ -1
VIM-202ENST00000421459 PLEKHA5Q9HAU0 1116 aa8.8□□□□□ -1
VIM-202ENST00000421459 RXFP3Q9NSD7 469 aa8.8□□□□□ -1
VIM-202ENST00000421459 SEMA4GQ9NTN9 838 aa8.8□□□□□ -1
VIM-202ENST00000421459 PPP4R2Q9NY27 417 aa8.8□□□□□ -1
VIM-202ENST00000421459 RAB23Q9ULC3 237 aa8.8□□□□□ -1
VIM-202ENST00000421459 TBX20Q9UMR3 447 aa8.8□□□□□ -1
VIM-202ENST00000421459 UBQLN1Q9UMX0 589 aaKnown RBP8.8□□□□□ -1
VIM-202ENST00000421459 STK24Q9Y6E0 443 aa8.8□□□□□ -1
VIM-202ENST00000421459 LAMA1P25391 3075 aa8.79□□□□□ -1
VIM-202ENST00000421459 MYBPHLA2RUH7 354 aa8.79□□□□□ -1
VIM-202ENST00000421459 OTOL1A6NHN0 477 aaPredicted RBP8.79□□□□□ -1
VIM-202ENST00000421459 OR6C75A6NL08 312 aa8.79□□□□□ -1
VIM-202ENST00000421459 DPYSL4O14531 572 aa8.79□□□□□ -1
VIM-202ENST00000421459 AXIN1O15169 862 aa8.79□□□□□ -1
VIM-202ENST00000421459 OGTO15294 1046 aa8.79□□□□□ -1
VIM-202ENST00000421459 RETP07949 1114 aa8.79□□□□□ -1
VIM-202ENST00000421459 ATF6P18850 670 aa8.79□□□□□ -1
VIM-202ENST00000421459 CYP3A5P20815 502 aa8.79□□□□□ -1
VIM-202ENST00000421459 NMT1P30419 496 aaKnown RBP8.79□□□□□ -1
VIM-202ENST00000421459 CTHP32929 405 aa8.79□□□□□ -1
VIM-202ENST00000421459 GPR15P49685 360 aa8.79□□□□□ -1
VIM-202ENST00000421459 ACOT2P49753 483 aa8.79□□□□□ -1
VIM-202ENST00000421459 LIG4P49917 911 aa8.79□□□□□ -1
VIM-202ENST00000421459 PLD1Q13393 1074 aa8.79□□□□□ -1
VIM-202ENST00000421459 MCM6Q14566 821 aa8.79□□□□□ -1
VIM-202ENST00000421459 SF3A2Q15428 464 aaKnown RBP8.79□□□□□ -1
VIM-202ENST00000421459 ZC2HC1CQ53FD0 456 aaPredicted RBP8.79□□□□□ -1
VIM-202ENST00000421459 PPM1JQ5JR12 505 aa8.79□□□□□ -1
VIM-202ENST00000421459 SDHAF4Q5VUM1 108 aa8.79□□□□□ -1
VIM-202ENST00000421459 SPATA1Q5VX52 437 aa8.79□□□□□ -1
VIM-202ENST00000421459 C9orf57Q5W0N0 161 aa8.79□□□□□ -1
VIM-202ENST00000421459 NAIF1Q69YI7 327 aaPredicted RBP8.79□□□□□ -1
VIM-202ENST00000421459 TRIM68Q6AZZ1 485 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms