RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 GUCY2FP51841 1108 aa15.81■□□□□ 0.12
USP4-203ENST00000415188 BPIFB4P59827 614 aa15.81■□□□□ 0.12
USP4-203ENST00000415188 CLDN10P78369 228 aa15.81■□□□□ 0.12
USP4-203ENST00000415188 ZNF200P98182 395 aaPredicted RBP15.81■□□□□ 0.12
USP4-203ENST00000415188 FMO1Q01740 532 aa15.81■□□□□ 0.12
USP4-203ENST00000415188 TTMPQ5BVD1 217 aa15.81■□□□□ 0.12
USP4-203ENST00000415188 DCAF12L1Q5VU92 463 aa15.81■□□□□ 0.12
USP4-203ENST00000415188 KCNV1Q6PIU1 500 aa15.81■□□□□ 0.12
USP4-203ENST00000415188 LRRC31Q6UY01 552 aa15.81■□□□□ 0.12
USP4-203ENST00000415188 ZSWIM2Q8NEG5 633 aa15.81■□□□□ 0.12
USP4-203ENST00000415188 PIK3R5Q8WYR1 880 aa15.81■□□□□ 0.12
USP4-203ENST00000415188 TRIM11Q96F44 468 aa15.81■□□□□ 0.12
USP4-203ENST00000415188 ZSWIM1Q9BR11 485 aa15.81■□□□□ 0.12
USP4-203ENST00000415188 CAPS2Q9BXY5 557 aa15.81■□□□□ 0.12
USP4-203ENST00000415188 PPME1Q9Y570 386 aa15.81■□□□□ 0.12
USP4-203ENST00000415188 STYXL1Q9Y6J8 313 aa15.81■□□□□ 0.12
USP4-203ENST00000415188 TANC1Q9C0D5 1861 aa15.81■□□□□ 0.12
USP4-203ENST00000415188 GOLGA6L10A6NI86 522 aa15.8■□□□□ 0.12
USP4-203ENST00000415188 HNRNPDLO14979 420 aaKnown RBP15.8■□□□□ 0.12
USP4-203ENST00000415188 CYP26A1O43174 497 aa15.8■□□□□ 0.12
USP4-203ENST00000415188 ERLIN2O94905 339 aa15.8■□□□□ 0.12
USP4-203ENST00000415188 ITGA4P13612 1032 aa15.8■□□□□ 0.12
USP4-203ENST00000415188 CHRNA3P32297 505 aa15.8■□□□□ 0.12
USP4-203ENST00000415188 DRG2P55039 364 aaKnown RBP15.8■□□□□ 0.12
USP4-203ENST00000415188 PRPF4BQ13523 1007 aaKnown RBP15.8■□□□□ 0.12
USP4-203ENST00000415188 HIC1Q14526 733 aa15.8■□□□□ 0.12
USP4-203ENST00000415188 GPNMBQ14956 572 aa15.8■□□□□ 0.12
USP4-203ENST00000415188 PSMD6Q15008 389 aa15.8■□□□□ 0.12
USP4-203ENST00000415188 SEL1L2Q5TEA6 688 aa15.8■□□□□ 0.12
USP4-203ENST00000415188 SLFN12LQ6IEE8 588 aa15.8■□□□□ 0.12
USP4-203ENST00000415188 PPP1R2P3Q6NXS1 205 aa15.8■□□□□ 0.12
USP4-203ENST00000415188 KDM7AQ6ZMT4 941 aa15.8■□□□□ 0.12
USP4-203ENST00000415188 C15orf39Q6ZRI6 1047 aa15.8■□□□□ 0.12
USP4-203ENST00000415188 CCDC60Q8IWA6 550 aaPredicted RBP15.8■□□□□ 0.12
USP4-203ENST00000415188 KAT5Q92993 513 aa15.8■□□□□ 0.12
USP4-203ENST00000415188 WNT8BQ93098 351 aa15.8■□□□□ 0.12
USP4-203ENST00000415188 CCDC127Q96BQ5 260 aa15.8■□□□□ 0.12
USP4-203ENST00000415188 BICD1Q96G01 975 aa15.8■□□□□ 0.12
USP4-203ENST00000415188 PCDHB18PQ96TA0 734 aa15.8■□□□□ 0.12
USP4-203ENST00000415188 SH2D3AQ9BRG2 576 aa15.8■□□□□ 0.12
USP4-203ENST00000415188 KIFC3Q9BVG8 833 aa15.8■□□□□ 0.12
USP4-203ENST00000415188 KATNAL1Q9BW62 490 aa15.8■□□□□ 0.12
USP4-203ENST00000415188 FAM129AQ9BZQ8 928 aa15.8■□□□□ 0.12
USP4-203ENST00000415188 SRRM3A6NNA2 597 aaPredicted RBP15.79■□□□□ 0.12
USP4-203ENST00000415188 PHF2O75151 1096 aa15.79■□□□□ 0.12
USP4-203ENST00000415188 MYBL1P10243 752 aa15.79■□□□□ 0.12
USP4-203ENST00000415188 TGFB3P10600 412 aa15.79■□□□□ 0.12
USP4-203ENST00000415188 RFC5P40937 340 aa15.79■□□□□ 0.12
USP4-203ENST00000415188 STRN3Q13033 797 aa15.79■□□□□ 0.12
USP4-203ENST00000415188 ADGRE1Q14246 886 aa15.79■□□□□ 0.12
USP4-203ENST00000415188 EMC2Q15006 297 aa15.79■□□□□ 0.12
USP4-203ENST00000415188 PTPROQ16827 1216 aa15.79■□□□□ 0.12
USP4-203ENST00000415188 RUFY4Q6ZNE9 571 aa15.79■□□□□ 0.12
USP4-203ENST00000415188 SV2AQ7L0J3 742 aa15.79■□□□□ 0.12
USP4-203ENST00000415188 TET1Q8NFU7 2136 aa15.79■□□□□ 0.12
USP4-203ENST00000415188 TAS1R2Q8TE23 839 aa15.79■□□□□ 0.12
USP4-203ENST00000415188 ARL8AQ96BM9 186 aa15.79■□□□□ 0.12
USP4-203ENST00000415188 ATP6V1G3Q96LB4 118 aa15.79■□□□□ 0.12
USP4-203ENST00000415188 C16orf70Q9BSU1 422 aa15.79■□□□□ 0.12
USP4-203ENST00000415188 COL25A1Q9BXS0 654 aaPredicted RBP15.79■□□□□ 0.12
USP4-203ENST00000415188 SLC28A3Q9HAS3 691 aa15.79■□□□□ 0.12
USP4-203ENST00000415188 AVENQ9NQS1 362 aaPredicted RBP15.79■□□□□ 0.12
USP4-203ENST00000415188 C1orf112Q9NSG2 853 aa15.79■□□□□ 0.12
USP4-203ENST00000415188 AMACRQ9UHK6 382 aa15.79■□□□□ 0.12
USP4-203ENST00000415188 TELO2Q9Y4R8 837 aa15.79■□□□□ 0.12
USP4-203ENST00000415188 MAFBQ9Y5Q3 323 aaPredicted RBP15.79■□□□□ 0.12
USP4-203ENST00000415188 CUL9Q8IWT3 2517 aa15.79■□□□□ 0.12
USP4-203ENST00000415188 ADGRA3Q8IWK6 1321 aa15.79■□□□□ 0.12
USP4-203ENST00000415188 TRIP12Q14669 1992 aaPredicted RBP15.79■□□□□ 0.12
USP4-203ENST00000415188 CHD7Q9P2D1 2997 aa15.79■□□□□ 0.12
USP4-203ENST00000415188 MYO9BQ13459 2157 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 TTI1O43156 1089 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 LDHAP00338 332 aaKnown RBP15.78■□□□□ 0.12
USP4-203ENST00000415188 OATP04181 439 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 SELPP16109 830 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 CTNNA1P35221 906 aaKnown RBP15.78■□□□□ 0.12
USP4-203ENST00000415188 NAMPTP43490 491 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 LIG4P49917 911 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 IRAK1P51617 712 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 POLGP54098 1239 aaPredicted RBP15.78■□□□□ 0.12
USP4-203ENST00000415188 DR1Q01658 176 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 BIRC3Q13489 604 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 ACAD10Q6JQN1 1059 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 LRRC8DQ7L1W4 858 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 ARFGAP2Q8N6H7 521 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 ZNF564Q8TBZ8 553 aaPredicted RBP15.78■□□□□ 0.12
USP4-203ENST00000415188 ALG3Q92685 438 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 CD101Q93033 1021 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 ZNF653Q96CK0 615 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 GAS2L1Q99501 681 aaPredicted RBP15.78■□□□□ 0.12
USP4-203ENST00000415188 PLVAPQ9BX97 442 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 NIFKQ9BYG3 293 aaKnown RBP15.78■□□□□ 0.12
USP4-203ENST00000415188 TMBIM4Q9HC24 238 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 ZNF302Q9NR11 478 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 PCYOX1Q9UHG3 505 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 MTUS1Q9ULD2 1270 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 PLAAQ9Y263 795 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 PCDHA11Q9Y5I1 949 aa15.78■□□□□ 0.12
USP4-203ENST00000415188 EIF3HO15372 352 aaKnown RBP eCLIP15.78■□□□□ 0.12
USP4-203ENST00000415188 MMEP08473 750 aa15.78■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms