RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 ANO9A1A5B4 782 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 ASMTLO95671 621 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 APRTP07741 180 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 CLTBP09497 229 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 PSMD4P55036 377 aaKnown RBP13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 SGO1Q5FBB7 561 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 DGKIO75912 1065 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 QARSP47897 775 aaKnown RBP13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 ACTR2P61160 394 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 PDXDC2PQ6P474 469 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 BEST2Q8NFU1 509 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 RNF26Q9BY78 433 aaPredicted RBP13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 MYH8P13535 1937 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 POU4F1Q01851 419 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 ZNF473Q8WTR7 871 aaKnown RBP13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 THUMPD3Q9BV44 507 aaKnown RBP13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 PCMTD2Q9NV79 361 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 BTBD7Q9P203 1132 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 C3orf70A6NLC5 250 aaPredicted RBP13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 SCRN1Q12765 414 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 ERAP2Q6P179 960 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 SEMA3EO15041 775 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 TPI1P60174 286 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 EXOSC10Q01780 885 aaKnown RBP13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 CHRNB3Q05901 458 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 CLCC1Q96S66 551 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 CCNL1Q9UK58 526 aaPredicted RBP13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 SIK3Q9Y2K2 1263 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 CYP2D7A0A087X1C5 515 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 IGF2BP3O00425 579 aaKnown RBP eCLIP13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 IFNA14P01570 189 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 EPB42P16452 691 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 FNTAP49354 379 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 KYNUQ16719 465 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 OLFML2AQ68BL7 652 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 CROCCP3Q8IVE0 287 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 STK32BQ9NY57 414 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 RABGEF1Q9UJ41 708 aa13.9□□□□□ -0.18
CCDC88A-204ENST00000413716 A0A0X1KG70 313 aa13.9□□□□□ -0.19
CCDC88A-204ENST00000413716 CLDN3O15551 220 aa13.9□□□□□ -0.19
CCDC88A-204ENST00000413716 JAK3P52333 1124 aa13.9□□□□□ -0.19
CCDC88A-204ENST00000413716 NPEPPSP55786 919 aa13.9□□□□□ -0.19
CCDC88A-204ENST00000413716 STX5Q13190 355 aa13.9□□□□□ -0.19
CCDC88A-204ENST00000413716 BYSLQ13895 437 aaKnown RBP13.9□□□□□ -0.19
CCDC88A-204ENST00000413716 LAYNQ6UX15 382 aa13.9□□□□□ -0.19
CCDC88A-204ENST00000413716 HAVCR1Q96D42 359 aa13.9□□□□□ -0.19
CCDC88A-204ENST00000413716 NMD3Q96D46 503 aaKnown RBP13.9□□□□□ -0.19
CCDC88A-204ENST00000413716 CAMKK2Q96RR4 588 aa13.9□□□□□ -0.19
CCDC88A-204ENST00000413716 PPP1R16BQ96T49 567 aa13.9□□□□□ -0.19
CCDC88A-204ENST00000413716 CCDC59Q9P031 241 aaKnown RBP13.9□□□□□ -0.19
CCDC88A-204ENST00000413716 PDS5AQ29RF7 1337 aaKnown RBP13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 UBN2Q6ZU65 1347 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 EFCAB10A6NFE3 127 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 PHKA2P46019 1235 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 CTSWP56202 376 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 LPCAT2Q7L5N7 544 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 EFHD2Q96C19 240 aaPredicted RBP13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 DHX35Q9H5Z1 703 aaKnown RBP13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 VPS9D1Q9Y2B5 631 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 CDK13Q14004 1512 aaKnown RBP13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 A0A087X0T9 212 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 ATP5JP18859 108 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 GPC3P51654 580 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 OOSP2Q86WS3 158 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 KRT35Q92764 455 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 CAPN10Q9HC96 672 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 ARHGEF11O15085 1522 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 SNUPNO95149 360 aaKnown RBP13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 CDH6P55285 790 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 CAMK1Q14012 370 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 ARHGEF7Q14155 803 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 TRPM5Q9NZQ8 1165 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 GGT7Q9UJ14 662 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 C1orf232A0A0U1RR37 186 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 TIMM44O43615 452 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 HS6ST3Q8IZP7 471 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 SVOPQ8N4V2 548 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 SGSM3Q96HU1 749 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 FAM92AA1XBS5 289 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 CCDC162PA2VCL2 907 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 CBFA2T3O75081 653 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 STX11O75558 287 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 ALOX12P18054 663 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 MAPK1P28482 360 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 ZNF200P98182 395 aaPredicted RBP13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 PRDM5Q9NQX1 630 aaPredicted RBP13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 KPNA5O15131 536 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 ERN1O75460 977 aaKnown RBP13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 EFR3AQ14156 821 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 UGT3A1Q6NUS8 523 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 CCDC80Q76M96 950 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 ZNF438Q7Z4V0 828 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 SAMD3Q8N6K7 520 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 DSN1Q9H410 356 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 LIMA1Q9UHB6 759 aaKnown RBP13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 PHF11Q9UIL8 331 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 MTMR6Q9Y217 621 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 UBE2QL1A1L167 161 aa13.89□□□□□ -0.19
CCDC88A-204ENST00000413716 EIF3EP60228 445 aaKnown RBP13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms