RNA–Protein interactions for RNA: ENST00000407082.3

SMARCB1-203, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 5 BASIC

Gene SMARCB1, Length 1,182 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-203ENST00000407082 RUFY1Q96T51 708 aa13.82□□□□□ -0.2
SMARCB1-203ENST00000407082 PDE11AQ9HCR9 933 aa13.82□□□□□ -0.2
SMARCB1-203ENST00000407082 TBX20Q9UMR3 447 aa13.82□□□□□ -0.2
SMARCB1-203ENST00000407082 NCANO14594 1321 aa13.82□□□□□ -0.2
SMARCB1-203ENST00000407082 TECTAO75443 2155 aa13.81□□□□□ -0.2
SMARCB1-203ENST00000407082 MBLAC1A4D2B0 266 aaPredicted RBP13.81□□□□□ -0.2
SMARCB1-203ENST00000407082 CCDC169A6NNP5 214 aa13.81□□□□□ -0.2
SMARCB1-203ENST00000407082 DDX3XO00571 662 aaKnown RBP eCLIP13.81□□□□□ -0.29e-12■■■■□ 22.2
SMARCB1-203ENST00000407082 MAGEB2O15479 319 aa13.81□□□□□ -0.2
SMARCB1-203ENST00000407082 ZC3H11AO75152 810 aaKnown RBP eCLIP13.81□□□□□ -0.2
SMARCB1-203ENST00000407082 CTNNB1P35222 781 aa13.81□□□□□ -0.2
SMARCB1-203ENST00000407082 MXI1P50539 228 aa13.81□□□□□ -0.2
SMARCB1-203ENST00000407082 HADHBP55084 474 aaKnown RBP13.81□□□□□ -0.2
SMARCB1-203ENST00000407082 TCF15Q12870 199 aa13.81□□□□□ -0.2
SMARCB1-203ENST00000407082 MKRN4PQ13434 485 aaPredicted RBP13.81□□□□□ -0.2
SMARCB1-203ENST00000407082 TRIM71Q2Q1W2 868 aaKnown RBP13.81□□□□□ -0.2
SMARCB1-203ENST00000407082 KRT39Q6A163 491 aa13.81□□□□□ -0.2
SMARCB1-203ENST00000407082 TRAF7Q6Q0C0 670 aa13.81□□□□□ -0.2
SMARCB1-203ENST00000407082 MAP4K3Q8IVH8 894 aa13.81□□□□□ -0.2
SMARCB1-203ENST00000407082 METTL13Q8N6R0 699 aa13.81□□□□□ -0.2
SMARCB1-203ENST00000407082 CCDC26Q8TAB7 109 aa13.81□□□□□ -0.2
SMARCB1-203ENST00000407082 KCNN1Q92952 543 aa13.81□□□□□ -0.2
SMARCB1-203ENST00000407082 CAVIN3Q969G5 261 aa13.81□□□□□ -0.2
SMARCB1-203ENST00000407082 PRRX2Q99811 253 aa13.81□□□□□ -0.2
SMARCB1-203ENST00000407082 AGPAT1Q99943 283 aa13.81□□□□□ -0.2
SMARCB1-203ENST00000407082 LRRC1Q9BTT6 524 aa13.81□□□□□ -0.2
SMARCB1-203ENST00000407082 ATP6V0A4Q9HBG4 840 aa13.81□□□□□ -0.2
SMARCB1-203ENST00000407082 POLD4Q9HCU8 107 aa13.81□□□□□ -0.2
SMARCB1-203ENST00000407082 SALL4Q9UJQ4 1053 aa13.81□□□□□ -0.2
SMARCB1-203ENST00000407082 TMCO5BA8MYB1 307 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 MIF4GDA9UHW6 222 aaKnown RBP13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 PGRMC1O00264 195 aaKnown RBP13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 KCNK3O14649 394 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 SLC16A4O15374 487 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 HSF2BPO75031 334 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 C22orf31O95567 290 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 FTCDO95954 541 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 TRIM49P0CI25 452 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 TRIM49CP0CI26 452 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 GZMAP12544 262 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 POLGP54098 1239 aaPredicted RBP13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 GALCP54803 685 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 HYAL1Q12794 435 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 CBWD6Q4V339 395 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 CBWD3Q5JTY5 395 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 CBWD5Q5RIA9 395 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 SLFN12LQ6IEE8 588 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 EFCAB12Q6NXP0 572 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 PPP1R2P3Q6NXS1 205 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 RUFY4Q6ZNE9 571 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 MAEAQ7L5Y9 396 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 MAATS1Q7Z4T9 603 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 DAAM2Q86T65 1068 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 SERINC5Q86VE9 423 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 FIBCD1Q8N539 461 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 WHAMMQ8TF30 809 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 AENQ8WTP8 325 aaKnown RBP13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 SLC7A3Q8WY07 619 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 SEPT8Q92599 483 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 TOP1MTQ969P6 601 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 CEP89Q96ST8 783 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 TMEM8AQ9HCN3 771 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 UBE2TQ9NPD8 197 aaPredicted RBP13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 CD207Q9UJ71 328 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 TTC7AQ9ULT0 858 aaPredicted RBP13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 HPCAL4Q9UM19 191 aa13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 PTPRZ1P23471 2315 aaPredicted RBP13.8□□□□□ -0.2
SMARCB1-203ENST00000407082 GOLGA6L10A0A0M3HER8 536 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 GOLGA8KD6RF30 607 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 GRM6O15303 877 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 LINC01565O15544 149 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 RTN2O75298 545 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 MAFO75444 373 aaPredicted RBP13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 LDHAP00338 332 aaKnown RBP13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 CTSHP09668 335 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 TMOD1P28289 359 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 CXCR5P32302 372 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 RFC5P40937 340 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 MATR3P43243 847 aaKnown RBP eCLIP13.79□□□□□ -0.25e-9■■■■□ 20.1
SMARCB1-203ENST00000407082 NPTX2P47972 431 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 NDUFV1P49821 464 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 FOXK2Q01167 660 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 STRN3Q13033 797 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 SMAD4Q13485 552 aaKnown RBP13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 CUL1Q13616 776 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 COL19A1Q14993 1142 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 ARHGAP44Q17R89 818 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 PLEKHG4Q58EX7 1191 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 TAF2Q6P1X5 1199 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 BMP8AQ7Z5Y6 402 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 KSR1Q8IVT5 923 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 RASGEF1CQ8N431 466 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 FBXL6Q8N531 539 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 UBL4BQ8N7F7 174 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 LRRC57Q8N9N7 239 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 RDH13Q8NBN7 331 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 TMEM161BQ8NDZ6 487 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 NT5C1BQ96P26 610 aa13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 JPH2Q9BR39 696 aaPredicted RBP13.79□□□□□ -0.2
SMARCB1-203ENST00000407082 PACSIN1Q9BY11 444 aa13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms