RNA–Protein interactions for RNA: ENST00000401468.7

VPS53-203, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 1,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-203ENST00000401468 GALTP07902 379 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 CLTAP09496 248 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 ALDH7A1P49419 539 aaKnown RBP9.97□□□□□ -0.81
VPS53-203ENST00000401468 SCNN1GP51170 649 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 MARSP56192 900 aaKnown RBP9.97□□□□□ -0.81
VPS53-203ENST00000401468 CLDN10P78369 228 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 FKBP3Q00688 224 aaKnown RBP9.97□□□□□ -0.81
VPS53-203ENST00000401468 KRT17Q04695 432 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 HSP90AA2PQ14568 343 aaPredicted RBP9.97□□□□□ -0.81
VPS53-203ENST00000401468 ZBTB41Q5SVQ8 909 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 ANKRD54Q6NXT1 300 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 ARMCX5Q6P1M9 558 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 LRSAM1Q6UWE0 723 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 HFE2Q6ZVN8 426 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 GPD1LQ8N335 351 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 TMEM130Q8N3G9 435 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 CEP120Q8N960 986 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 EHBP1Q8NDI1 1231 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 GSTCDQ8NEC7 633 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 ZSWIM2Q8NEG5 633 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 PRR7Q8TB68 274 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 ENOX1Q8TC92 643 aaKnown RBP9.97□□□□□ -0.81
VPS53-203ENST00000401468 POMGNT1Q8WZA1 660 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 HPS1Q92902 700 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 PPP2R3CQ969Q6 453 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 BORCS6Q96GS4 357 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 TMEM169Q96HH4 297 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 CEP63Q96MT8 703 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 MSTO1Q9BUK6 570 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 GZF1Q9H116 711 aaPredicted RBP9.97□□□□□ -0.81
VPS53-203ENST00000401468 RSAD1Q9HA92 442 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 PLEKHA5Q9HAU0 1116 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 KIAA1586Q9HCI6 787 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 CNTN3Q9P232 1028 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 ANKFY1Q9P2R3 1169 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 PUF60Q9UHX1 559 aaKnown RBP9.97□□□□□ -0.81
VPS53-203ENST00000401468 GIT1Q9Y2X7 761 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 HCFC2Q9Y5Z7 792 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 TSC2P49815 1807 aa9.97□□□□□ -0.81
VPS53-203ENST00000401468 IKBKBO14920 756 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 TRIM66O15016 1216 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 ITGA4P13612 1032 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 NR2F2P24468 414 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 IGFBP6P24592 240 aaPredicted RBP9.96□□□□□ -0.82
VPS53-203ENST00000401468 RPL13P26373 211 aaKnown RBP9.96□□□□□ -0.82
VPS53-203ENST00000401468 OR1G1P47890 313 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 PLCB3Q01970 1234 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 UBE3AQ05086 875 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 SMC1AQ14683 1233 aaKnown RBP9.96□□□□□ -0.82
VPS53-203ENST00000401468 NAB2Q15742 525 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 ENOX2Q16206 610 aaKnown RBP9.96□□□□□ -0.82
VPS53-203ENST00000401468 PTPRNQ16849 979 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 SLC10A6Q3KNW5 377 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 ANO6Q4KMQ2 910 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 TMC5Q6UXY8 1006 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 IRF2BP1Q8IU81 584 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 BRSK2Q8IWQ3 736 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 XXYLT1Q8NBI6 393 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 PGBD4Q96DM1 585 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 IGSF21Q96ID5 467 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 MFSD14AQ96MC6 490 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 FAM193BQ96PV7 902 aaPredicted RBP9.96□□□□□ -0.82
VPS53-203ENST00000401468 PAAF1Q9BRP4 392 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 ZBP1Q9H171 429 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 DNAJC25Q9H1X3 360 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 S1PR5Q9H228 398 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 HSD3B7Q9H2F3 369 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 POMKQ9H5K3 350 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 CTNND2Q9UQB3 1225 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 FAM50BQ9Y247 325 aa9.96□□□□□ -0.82
VPS53-203ENST00000401468 ATG2BQ96BY7 2078 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 VPS13AQ96RL7 3174 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 ARL5CA6NH57 179 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 NRP1O14786 923 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 CLIC2O15247 247 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 NCK2O43639 380 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 AKAP3O75969 853 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 RECQL4O94761 1208 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 PDGFBP01127 241 aaPredicted RBP9.95□□□□□ -0.82
VPS53-203ENST00000401468 ASGR2P07307 311 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 KCNE1P15382 129 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 RPL17P18621 184 aaKnown RBP9.95□□□□□ -0.82
VPS53-203ENST00000401468 PPM1AP35813 382 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 TNFSF9P41273 254 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 ACOT2P49753 483 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 ADAM9Q13443 819 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 KCNC3Q14003 757 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 CBX2Q14781 532 aaPredicted RBP9.95□□□□□ -0.82
VPS53-203ENST00000401468 NCAPHQ15003 741 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 IQCB1Q15051 598 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 ZBTB6Q15916 424 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 SNRNP35Q16560 246 aaKnown RBP9.95□□□□□ -0.82
VPS53-203ENST00000401468 TMEM132AQ24JP5 1023 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 CDKAL1Q5VV42 579 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 FILIP1Q7Z7B0 1213 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 ZBTB33Q86T24 672 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 NT5DC4Q86YG4 428 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 CBWD2Q8IUF1 395 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 CD302Q8IX05 232 aa9.95□□□□□ -0.82
VPS53-203ENST00000401468 HACE1Q8IYU2 909 aa9.95□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms