RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 NCAPG2Q86XI2 1143 aa17.02■□□□□ 0.31
PCDH1-203ENST00000394536 CKAP2Q8WWK9 683 aa17.02■□□□□ 0.31
PCDH1-203ENST00000394536 HEXIM2Q96MH2 286 aaKnown RBP17.02■□□□□ 0.31
PCDH1-203ENST00000394536 TTC1Q99614 292 aa17.02■□□□□ 0.31
PCDH1-203ENST00000394536 FHDC1Q9C0D6 1143 aaPredicted RBP17.02■□□□□ 0.31
PCDH1-203ENST00000394536 FBXO40Q9UH90 709 aa17.02■□□□□ 0.31
PCDH1-203ENST00000394536 GRAP2O75791 330 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 CALB1P05937 261 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 RNASELQ05823 741 aaKnown RBP17.01■□□□□ 0.31
PCDH1-203ENST00000394536 CUL2Q13617 745 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 TNFAIP1Q13829 316 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 MYBPC2Q14324 1141 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 CCNG2Q16589 344 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 CDAN1Q8IWY9 1227 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 DMAC2Q9NW81 257 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 AGAP1Q9UPQ3 857 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 CHRNB2P17787 502 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 CAP2P40123 477 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 NCALDP61601 193 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 CENPCQ03188 943 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 KDSRQ06136 332 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 SLC15A2Q16348 729 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 SLC9A9Q8IVB4 645 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 FITM2Q8N6M3 262 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 C7orf31Q8N865 590 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 FAM71DQ8N9W8 422 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 FAM161BQ96MY7 647 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 MBOAT7Q96N66 472 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 LRRC19Q9H756 370 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.01■□□□□ 0.31
PCDH1-203ENST00000394536 C15orf41Q9Y2V0 281 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 IVNS1ABPQ9Y6Y0 642 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 HMGCS2P54868 508 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 WDR72Q3MJ13 1102 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 FAXCQ5TGI0 409 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 RASIP1Q5U651 963 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 TATDN1Q6P1N9 297 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 CYP4X1Q8N118 509 aa17.01■□□□□ 0.31
PCDH1-203ENST00000394536 PSMC3IPQ9P2W1 217 aaPredicted RBP17.01■□□□□ 0.31
PCDH1-203ENST00000394536 G3BP2Q9UN86 482 aaKnown RBP17.01■□□□□ 0.31
PCDH1-203ENST00000394536 TIAM2Q8IVF5 1701 aa17■□□□□ 0.31
PCDH1-203ENST00000394536 F8VP50 259 aa17■□□□□ 0.31
PCDH1-203ENST00000394536 PEX5P50542 639 aa17■□□□□ 0.31
PCDH1-203ENST00000394536 YARSP54577 528 aaKnown RBP17■□□□□ 0.31
PCDH1-203ENST00000394536 TAS2R40P59535 323 aa17■□□□□ 0.31
PCDH1-203ENST00000394536 NLRP9Q7RTR0 991 aa17■□□□□ 0.31
PCDH1-203ENST00000394536 EMC1Q8N766 993 aa17■□□□□ 0.31
PCDH1-203ENST00000394536 ATXN2LQ8WWM7 1075 aaKnown RBP17■□□□□ 0.31
PCDH1-203ENST00000394536 RMDN2Q96LZ7 410 aa17■□□□□ 0.31
PCDH1-203ENST00000394536 MYLK2Q9H1R3 596 aa17■□□□□ 0.31
PCDH1-203ENST00000394536 SMG5Q9UPR3 1016 aaKnown RBP17■□□□□ 0.31
PCDH1-203ENST00000394536 IQANK1A0A1B0GTG1 560 aa17■□□□□ 0.31
PCDH1-203ENST00000394536 PIK3CDO00329 1044 aa17■□□□□ 0.31
PCDH1-203ENST00000394536 UPP2O95045 317 aa17■□□□□ 0.31
PCDH1-203ENST00000394536 CYP1A2P05177 515 aa17■□□□□ 0.31
PCDH1-203ENST00000394536 CTCFP49711 727 aaPredicted RBP17■□□□□ 0.31
PCDH1-203ENST00000394536 EIF3EP60228 445 aaKnown RBP17■□□□□ 0.31
PCDH1-203ENST00000394536 RPL7AP62424 266 aaKnown RBP17■□□□□ 0.31
PCDH1-203ENST00000394536 TRIM72Q6ZMU5 477 aa17■□□□□ 0.31
PCDH1-203ENST00000394536 CCDC125Q86Z20 511 aa17■□□□□ 0.31
PCDH1-203ENST00000394536 ZNF317Q96PQ6 595 aaPredicted RBP17■□□□□ 0.31
PCDH1-203ENST00000394536 PRM3Q9NNZ6 103 aa17■□□□□ 0.31
PCDH1-203ENST00000394536 METTL5Q9NRN9 209 aaKnown RBP17■□□□□ 0.31
PCDH1-203ENST00000394536 SPATS2LQ9NUQ6 558 aaKnown RBP17■□□□□ 0.31
PCDH1-203ENST00000394536 SEPT10Q9P0V9 454 aa17■□□□□ 0.31
PCDH1-203ENST00000394536 O00370 1275 aa17■□□□□ 0.31
PCDH1-203ENST00000394536 FSCN2O14926 492 aa17■□□□□ 0.31
PCDH1-203ENST00000394536 LDHAP00338 332 aaKnown RBP17■□□□□ 0.31
PCDH1-203ENST00000394536 SAT1P21673 171 aa17■□□□□ 0.31
PCDH1-203ENST00000394536 TBXAS1P24557 533 aaPredicted RBP17■□□□□ 0.31
PCDH1-203ENST00000394536 EPHB2P29323 1055 aa17■□□□□ 0.31
PCDH1-203ENST00000394536 NLRP11P59045 1033 aaKnown RBP17■□□□□ 0.31
PCDH1-203ENST00000394536 TAF1BQ53T94 588 aaPredicted RBP17■□□□□ 0.31
PCDH1-203ENST00000394536 SMC1BQ8NDV3 1235 aa17■□□□□ 0.31
PCDH1-203ENST00000394536 FLAD1Q8NFF5 587 aa17■□□□□ 0.31
PCDH1-203ENST00000394536 GBP5Q96PP8 586 aa17■□□□□ 0.31
PCDH1-203ENST00000394536 PDCD2LQ9BRP1 358 aa17■□□□□ 0.31
PCDH1-203ENST00000394536 MYCNP04198 464 aaPredicted RBP16.99■□□□□ 0.31
PCDH1-203ENST00000394536 RBP3P10745 1247 aa16.99■□□□□ 0.31
PCDH1-203ENST00000394536 RPA3P35244 121 aaPredicted RBP16.99■□□□□ 0.31
PCDH1-203ENST00000394536 CDH6P55285 790 aa16.99■□□□□ 0.31
PCDH1-203ENST00000394536 PDE1BQ01064 536 aa16.99■□□□□ 0.31
PCDH1-203ENST00000394536 SPDYCQ5MJ68 293 aa16.99■□□□□ 0.31
PCDH1-203ENST00000394536 FBXO41Q8TF61 875 aa16.99■□□□□ 0.31
PCDH1-203ENST00000394536 TSSK1BQ9BXA7 367 aa16.99■□□□□ 0.31
PCDH1-203ENST00000394536 ZNF302Q9NR11 478 aa16.99■□□□□ 0.31
PCDH1-203ENST00000394536 ANKEF1Q9NU02 776 aa16.99■□□□□ 0.31
PCDH1-203ENST00000394536 HEY2Q9UBP5 337 aa16.99■□□□□ 0.31
PCDH1-203ENST00000394536 ZMYM2Q9UBW7 1377 aa16.99■□□□□ 0.31
PCDH1-203ENST00000394536 ATXN2Q99700 1313 aaKnown RBP16.99■□□□□ 0.31
PCDH1-203ENST00000394536 SPDYE2BA6NHP3 402 aa16.99■□□□□ 0.31
PCDH1-203ENST00000394536 SPDYE6P0CI01 402 aa16.99■□□□□ 0.31
PCDH1-203ENST00000394536 TFDP1Q14186 410 aa16.99■□□□□ 0.31
PCDH1-203ENST00000394536 SDCCAG8Q86SQ7 713 aaPredicted RBP16.99■□□□□ 0.31
PCDH1-203ENST00000394536 ANKRD36BP1Q96IX9 119 aa16.99■□□□□ 0.31
PCDH1-203ENST00000394536 CDHR1Q96JP9 859 aa16.99■□□□□ 0.31
PCDH1-203ENST00000394536 FAM111AQ96PZ2 611 aa16.99■□□□□ 0.31
PCDH1-203ENST00000394536 SMYD3Q9H7B4 428 aa16.99■□□□□ 0.31
PCDH1-203ENST00000394536 STOML1Q9UBI4 398 aa16.99■□□□□ 0.31
PCDH1-203ENST00000394536 XPO7Q9UIA9 1087 aaKnown RBP16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms