RNA–Protein interactions for RNA: ENST00000394299.6

GPC3-202, Transcript of glypican 3, humanhuman

TSL 1 (best) BASIC

Gene GPC3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC3-202ENST00000394299 SH3GL2Q99962 352 aa16.04■□□□□ 0.16
GPC3-202ENST00000394299 ERP44Q9BS26 406 aa16.04■□□□□ 0.16
GPC3-202ENST00000394299 HEMGNQ9BXL5 484 aa16.04■□□□□ 0.16
GPC3-202ENST00000394299 KLHL11Q9NVR0 708 aa16.04■□□□□ 0.16
GPC3-202ENST00000394299 HMGXB4Q9UGU5 601 aa16.04■□□□□ 0.16
GPC3-202ENST00000394299 TLR3O15455 904 aaKnown RBP16.03■□□□□ 0.16
GPC3-202ENST00000394299 PHF2O75151 1096 aa16.03■□□□□ 0.16
GPC3-202ENST00000394299 TMOD1P28289 359 aa16.03■□□□□ 0.16
GPC3-202ENST00000394299 HSD17B3P37058 310 aa16.03■□□□□ 0.16
GPC3-202ENST00000394299 SSR1P43307 286 aaKnown RBP16.03■□□□□ 0.16
GPC3-202ENST00000394299 SURF1Q15526 300 aa16.03■□□□□ 0.16
GPC3-202ENST00000394299 FAM110CQ1W6H9 321 aa16.03■□□□□ 0.16
GPC3-202ENST00000394299 ALS2CLQ60I27 953 aa16.03■□□□□ 0.16
GPC3-202ENST00000394299 DUPD1Q68J44 220 aa16.03■□□□□ 0.16
GPC3-202ENST00000394299 ATG4AQ8WYN0 398 aa16.03■□□□□ 0.16
GPC3-202ENST00000394299 SEC14L1Q92503 715 aa16.03■□□□□ 0.16
GPC3-202ENST00000394299 EXOC4Q96A65 974 aa16.03■□□□□ 0.16
GPC3-202ENST00000394299 NFKBIZQ9BYH8 718 aa16.03■□□□□ 0.16
GPC3-202ENST00000394299 ABHD16BQ9H3Z7 469 aa16.03■□□□□ 0.16
GPC3-202ENST00000394299 SMYD3Q9H7B4 428 aa16.03■□□□□ 0.16
GPC3-202ENST00000394299 LRRC4CQ9HCJ2 640 aa16.03■□□□□ 0.16
GPC3-202ENST00000394299 IGF2BP3O00425 579 aaKnown RBP eCLIP16.02■□□□□ 0.166e-10■□□□□ 8.8
GPC3-202ENST00000394299 TSPAN1O60635 241 aa16.02■□□□□ 0.16
GPC3-202ENST00000394299 PROSCO94903 275 aa16.02■□□□□ 0.16
GPC3-202ENST00000394299 MYBL1P10243 752 aa16.02■□□□□ 0.16
GPC3-202ENST00000394299 CD19P15391 556 aa16.02■□□□□ 0.16
GPC3-202ENST00000394299 MMP8P22894 467 aa16.02■□□□□ 0.16
GPC3-202ENST00000394299 HSPA9P38646 679 aaKnown RBP16.02■□□□□ 0.16
GPC3-202ENST00000394299 HIC1Q14526 733 aa16.02■□□□□ 0.16
GPC3-202ENST00000394299 CCL14Q16627 93 aa16.02■□□□□ 0.16
GPC3-202ENST00000394299 LIN9Q5TKA1 542 aa16.02■□□□□ 0.16
GPC3-202ENST00000394299 PLEKHA7Q6IQ23 1121 aa16.02■□□□□ 0.16
GPC3-202ENST00000394299 DENND1BQ6P3S1 775 aa16.02■□□□□ 0.16
GPC3-202ENST00000394299 ILDR2Q71H61 639 aa16.02■□□□□ 0.16
GPC3-202ENST00000394299 DDX27Q96GQ7 796 aaKnown RBP16.02■□□□□ 0.16
GPC3-202ENST00000394299 PLAAQ9Y263 795 aa16.02■□□□□ 0.16
GPC3-202ENST00000394299 UNCXA6NJT0 531 aa16.02■□□□□ 0.15
GPC3-202ENST00000394299 PLTPP55058 493 aa16.02■□□□□ 0.15
GPC3-202ENST00000394299 HUNKP57058 714 aa16.02■□□□□ 0.15
GPC3-202ENST00000394299 TNFAIP2Q03169 654 aa16.02■□□□□ 0.15
GPC3-202ENST00000394299 TRIM72Q6ZMU5 477 aa16.02■□□□□ 0.15
GPC3-202ENST00000394299 MREGQ8N565 214 aa16.02■□□□□ 0.15
GPC3-202ENST00000394299 CXorf38Q8TB03 319 aa16.02■□□□□ 0.15
GPC3-202ENST00000394299 RUFY1Q96T51 708 aa16.02■□□□□ 0.15
GPC3-202ENST00000394299 CHST7Q9NS84 486 aa16.02■□□□□ 0.15
GPC3-202ENST00000394299 CYTH4Q9UIA0 394 aa16.02■□□□□ 0.15
GPC3-202ENST00000394299 GOLGA6CA6NDK9 693 aa16.01■□□□□ 0.15
GPC3-202ENST00000394299 GOLGA6DP0CG33 693 aa16.01■□□□□ 0.15
GPC3-202ENST00000394299 COILP38432 576 aaPredicted RBP16.01■□□□□ 0.15
GPC3-202ENST00000394299 OGDHQ02218 1023 aa16.01■□□□□ 0.15
GPC3-202ENST00000394299 DGKDQ16760 1214 aa16.01■□□□□ 0.15
GPC3-202ENST00000394299 FAM187BQ17R55 369 aa16.01■□□□□ 0.15
GPC3-202ENST00000394299 CCDC105Q8IYK2 499 aa16.01■□□□□ 0.15
GPC3-202ENST00000394299 NMRK2Q9NPI5 230 aa16.01■□□□□ 0.15
GPC3-202ENST00000394299 GOLGA6AQ9NYA3 693 aa16.01■□□□□ 0.15
GPC3-202ENST00000394299 MCF2P10911 925 aa16.01■□□□□ 0.15
GPC3-202ENST00000394299 RPL21P46778 160 aaKnown RBP16.01■□□□□ 0.15
GPC3-202ENST00000394299 FKBP1BP68106 108 aa16.01■□□□□ 0.15
GPC3-202ENST00000394299 DHX9Q08211 1270 aaKnown RBP16.01■□□□□ 0.15
GPC3-202ENST00000394299 ZNF252P-AS1Q0IIN9 211 aa16.01■□□□□ 0.15
GPC3-202ENST00000394299 ZNF667Q5HYK9 610 aa16.01■□□□□ 0.15
GPC3-202ENST00000394299 UBAP2Q5T6F2 1119 aaKnown RBP16.01■□□□□ 0.15
GPC3-202ENST00000394299 TTC19Q6DKK2 380 aaPredicted RBP16.01■□□□□ 0.15
GPC3-202ENST00000394299 GOLGA6L1Q8N7Z2 621 aa16.01■□□□□ 0.15
GPC3-202ENST00000394299 FEZF2Q8TBJ5 459 aa16.01■□□□□ 0.15
GPC3-202ENST00000394299 TRIM11Q96F44 468 aa16.01■□□□□ 0.15
GPC3-202ENST00000394299 R3HDM2Q9Y2K5 976 aaKnown RBP16.01■□□□□ 0.15
GPC3-202ENST00000394299 HES2Q9Y543 173 aa16.01■□□□□ 0.15
GPC3-202ENST00000394299 F8VP50 259 aa16■□□□□ 0.15
GPC3-202ENST00000394299 ZEB2O60315 1214 aa16■□□□□ 0.15
GPC3-202ENST00000394299 POLR2BP30876 1174 aaKnown RBP16■□□□□ 0.15
GPC3-202ENST00000394299 CHRNA3P32297 505 aa16■□□□□ 0.15
GPC3-202ENST00000394299 LACTBP83111 547 aaPredicted RBP16■□□□□ 0.15
GPC3-202ENST00000394299 ZNF200P98182 395 aaPredicted RBP16■□□□□ 0.15
GPC3-202ENST00000394299 POU5F1BQ06416 359 aa16■□□□□ 0.15
GPC3-202ENST00000394299 C1QBPQ07021 282 aaKnown RBP16■□□□□ 0.15
GPC3-202ENST00000394299 OLFML2BQ68BL8 750 aa16■□□□□ 0.15
GPC3-202ENST00000394299 IQSEC1Q6DN90 963 aa16■□□□□ 0.15
GPC3-202ENST00000394299 DPH6Q7L8W6 267 aa16■□□□□ 0.15
GPC3-202ENST00000394299 IFNLR1Q8IU57 520 aaPredicted RBP16■□□□□ 0.15
GPC3-202ENST00000394299 FBXO25Q8TCJ0 367 aa16■□□□□ 0.15
GPC3-202ENST00000394299 UBLCP1Q8WVY7 318 aaPredicted RBP16■□□□□ 0.15
GPC3-202ENST00000394299 ACSF2Q96CM8 615 aaPredicted RBP16■□□□□ 0.15
GPC3-202ENST00000394299 MCEEQ96PE7 176 aa16■□□□□ 0.15
GPC3-202ENST00000394299 ZDHHC18Q9NUE0 388 aa16■□□□□ 0.15
GPC3-202ENST00000394299 AGAP1Q9UPQ3 857 aa16■□□□□ 0.15
GPC3-202ENST00000394299 ANK1P16157 1881 aa16■□□□□ 0.15
GPC3-202ENST00000394299 PI4K2BG5E9Z4 385 aa16■□□□□ 0.15
GPC3-202ENST00000394299 FSCN2O14926 492 aa16■□□□□ 0.15
GPC3-202ENST00000394299 ERLIN2O94905 339 aa16■□□□□ 0.15
GPC3-202ENST00000394299 IL18RAPO95256 599 aa16■□□□□ 0.15
GPC3-202ENST00000394299 CAPN2P17655 700 aa16■□□□□ 0.15
GPC3-202ENST00000394299 RAD23BP54727 409 aa16■□□□□ 0.15
GPC3-202ENST00000394299 SKIDA1Q1XH10 827 aa16■□□□□ 0.15
GPC3-202ENST00000394299 TXNRD3NBQ6F5E7 133 aa16■□□□□ 0.15
GPC3-202ENST00000394299 ZDHHC24Q6UX98 284 aa16■□□□□ 0.15
GPC3-202ENST00000394299 CCDC50Q8IVM0 306 aa16■□□□□ 0.15
GPC3-202ENST00000394299 KAT2BQ92831 832 aa16■□□□□ 0.15
GPC3-202ENST00000394299 RNF25Q96BH1 459 aaPredicted RBP16■□□□□ 0.15
GPC3-202ENST00000394299 VCPIP1Q96JH7 1222 aa16■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms