RNA–Protein interactions for RNA: ENST00000391813.5

SHANK1-203, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 1 (best) BASIC

Gene SHANK1, Length 4,785 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-203ENST00000391813 GOLPH3Q9H4A6 298 aa20.65■□□□□ 0.9
SHANK1-203ENST00000391813 TUFT1Q9NNX1 390 aa20.65■□□□□ 0.9
SHANK1-203ENST00000391813 ACTR2P61160 394 aa20.64■□□□□ 0.9
SHANK1-203ENST00000391813 FLOT2Q14254 428 aa20.64■□□□□ 0.9
SHANK1-203ENST00000391813 SCUBE1Q8IWY4 988 aa20.64■□□□□ 0.9
SHANK1-203ENST00000391813 RYBPQ8N488 228 aaPredicted RBP20.64■□□□□ 0.9
SHANK1-203ENST00000391813 CLMNQ96JQ2 1002 aa20.64■□□□□ 0.9
SHANK1-203ENST00000391813 FAM213AQ9BRX8 229 aa20.64■□□□□ 0.9
SHANK1-203ENST00000391813 ELP3Q9H9T3 547 aa20.64■□□□□ 0.9
SHANK1-203ENST00000391813 DENND3A2RUS2 1198 aa20.64■□□□□ 0.89
SHANK1-203ENST00000391813 SLC16A4O15374 487 aa20.64■□□□□ 0.89
SHANK1-203ENST00000391813 ATP9AO75110 1047 aa20.64■□□□□ 0.89
SHANK1-203ENST00000391813 CLPTM1O96005 669 aa20.64■□□□□ 0.89
SHANK1-203ENST00000391813 CCDC159P0C7I6 412 aa20.64■□□□□ 0.89
SHANK1-203ENST00000391813 HSPA1AP0DMV8 641 aaKnown RBP20.64■□□□□ 0.89
SHANK1-203ENST00000391813 HSPA1BP0DMV9 641 aaKnown RBP20.64■□□□□ 0.89
SHANK1-203ENST00000391813 ELF3P78545 371 aaPredicted RBP20.64■□□□□ 0.89
SHANK1-203ENST00000391813 SIX6OS1Q8N1H7 587 aa20.64■□□□□ 0.89
SHANK1-203ENST00000391813 TTC39CQ8N584 583 aa20.64■□□□□ 0.89
SHANK1-203ENST00000391813 ARHGAP20Q9P2F6 1191 aa20.64■□□□□ 0.89
SHANK1-203ENST00000391813 GTF3C4Q9UKN8 822 aa20.64■□□□□ 0.89
SHANK1-203ENST00000391813 AURKCQ9UQB9 309 aa20.64■□□□□ 0.89
SHANK1-203ENST00000391813 SPDYE16A6NNV3 312 aaPredicted RBP20.64■□□□□ 0.89
SHANK1-203ENST00000391813 TNPO2O14787 897 aaKnown RBP20.64■□□□□ 0.89
SHANK1-203ENST00000391813 RFX5P48382 616 aaPredicted RBP20.64■□□□□ 0.89
SHANK1-203ENST00000391813 HMGCS2P54868 508 aa20.64■□□□□ 0.89
SHANK1-203ENST00000391813 MTMR1Q13613 665 aa20.64■□□□□ 0.89
SHANK1-203ENST00000391813 SPDYE2Q495Y8 402 aa20.64■□□□□ 0.89
SHANK1-203ENST00000391813 ARID3BQ8IVW6 561 aaPredicted RBP20.64■□□□□ 0.89
SHANK1-203ENST00000391813 SENP7Q9BQF6 1050 aa20.64■□□□□ 0.89
SHANK1-203ENST00000391813 EIF2AK1Q9BQI3 630 aaKnown RBP20.64■□□□□ 0.89
SHANK1-203ENST00000391813 SYF2O95926 243 aaKnown RBP20.64■□□□□ 0.89
SHANK1-203ENST00000391813 ZNF157P51786 506 aaPredicted RBP20.64■□□□□ 0.89
SHANK1-203ENST00000391813 NUP107P57740 925 aa20.64■□□□□ 0.89
SHANK1-203ENST00000391813 PPP4CP60510 307 aa20.64■□□□□ 0.89
SHANK1-203ENST00000391813 PPP2R3CQ969Q6 453 aa20.64■□□□□ 0.89
SHANK1-203ENST00000391813 ARHGEF26Q96DR7 871 aa20.64■□□□□ 0.89
SHANK1-203ENST00000391813 RPAP3Q9H6T3 665 aaPredicted RBP20.64■□□□□ 0.89
SHANK1-203ENST00000391813 SEC24DO94855 1032 aaPredicted RBP20.63■□□□□ 0.89
SHANK1-203ENST00000391813 SERPINB1P30740 379 aa20.63■□□□□ 0.89
SHANK1-203ENST00000391813 AP3M2P53677 418 aa20.63■□□□□ 0.89
SHANK1-203ENST00000391813 DDR1Q08345 913 aa20.63■□□□□ 0.89
SHANK1-203ENST00000391813 ZNF844Q08AG5 666 aa20.63■□□□□ 0.89
SHANK1-203ENST00000391813 TRIM16LQ309B1 348 aa20.63■□□□□ 0.89
SHANK1-203ENST00000391813 C9orf131Q5VYM1 1079 aa20.63■□□□□ 0.89
SHANK1-203ENST00000391813 TBX3O15119 743 aa20.63■□□□□ 0.89
SHANK1-203ENST00000391813 AKAP10O43572 662 aa20.63■□□□□ 0.89
SHANK1-203ENST00000391813 WEE2P0C1S8 567 aa20.63■□□□□ 0.89
SHANK1-203ENST00000391813 QARSP47897 775 aaKnown RBP20.63■□□□□ 0.89
SHANK1-203ENST00000391813 SARSP49591 514 aaKnown RBP20.63■□□□□ 0.89
SHANK1-203ENST00000391813 GALNT4Q8N4A0 578 aa20.63■□□□□ 0.89
SHANK1-203ENST00000391813 DACH2Q96NX9 599 aa20.63■□□□□ 0.89
SHANK1-203ENST00000391813 TEX13BQ9BXU2 312 aa20.63■□□□□ 0.89
SHANK1-203ENST00000391813 DEFB129Q9H1M3 183 aa20.63■□□□□ 0.89
SHANK1-203ENST00000391813 EML4Q9HC35 981 aaKnown RBP20.63■□□□□ 0.89
SHANK1-203ENST00000391813 ADARB2Q9NS39 739 aaKnown RBP20.63■□□□□ 0.89
SHANK1-203ENST00000391813 AHCYL1O43865 530 aa20.63■□□□□ 0.89
SHANK1-203ENST00000391813 SFNP31947 248 aa20.63■□□□□ 0.89
SHANK1-203ENST00000391813 QRICH1Q2TAL8 776 aa20.63■□□□□ 0.89
SHANK1-203ENST00000391813 ZNF699Q32M78 642 aa20.63■□□□□ 0.89
SHANK1-203ENST00000391813 SNX30Q5VWJ9 437 aa20.63■□□□□ 0.89
SHANK1-203ENST00000391813 ADCK1Q86TW2 530 aa20.63■□□□□ 0.89
SHANK1-203ENST00000391813 STK32AQ8WU08 396 aa20.63■□□□□ 0.89
SHANK1-203ENST00000391813 CENPTQ96BT3 561 aa20.63■□□□□ 0.89
SHANK1-203ENST00000391813 GDF3Q9NR23 364 aa20.63■□□□□ 0.89
SHANK1-203ENST00000391813 KRT16P08779 473 aa20.62■□□□□ 0.89
SHANK1-203ENST00000391813 FXR2P51116 673 aaKnown RBP eCLIP20.62■□□□□ 0.89
SHANK1-203ENST00000391813 CDH6P55285 790 aa20.62■□□□□ 0.89
SHANK1-203ENST00000391813 BTKQ06187 659 aa20.62■□□□□ 0.89
SHANK1-203ENST00000391813 FBXL16Q8N461 479 aa20.62■□□□□ 0.89
SHANK1-203ENST00000391813 PCYOX1LQ8NBM8 494 aa20.62■□□□□ 0.89
SHANK1-203ENST00000391813 A8MXQ7 604 aa20.62■□□□□ 0.89
SHANK1-203ENST00000391813 TNFRSF8P28908 595 aa20.62■□□□□ 0.89
SHANK1-203ENST00000391813 CPA2P48052 419 aa20.62■□□□□ 0.89
SHANK1-203ENST00000391813 SLC34A1Q06495 639 aa20.62■□□□□ 0.89
SHANK1-203ENST00000391813 WLSQ5T9L3 541 aa20.62■□□□□ 0.89
SHANK1-203ENST00000391813 HAUS6Q7Z4H7 955 aa20.62■□□□□ 0.89
SHANK1-203ENST00000391813 ZFYVE28Q9HCC9 887 aa20.62■□□□□ 0.89
SHANK1-203ENST00000391813 MTMR4Q9NYA4 1195 aa20.62■□□□□ 0.89
SHANK1-203ENST00000391813 KCND2Q9NZV8 630 aa20.62■□□□□ 0.89
SHANK1-203ENST00000391813 ABCE1P61221 599 aaKnown RBP20.62■□□□□ 0.89
SHANK1-203ENST00000391813 ZBTB33Q86T24 672 aa20.62■□□□□ 0.89
SHANK1-203ENST00000391813 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP20.62■□□□□ 0.89
SHANK1-203ENST00000391813 TIPINQ9BVW5 301 aa20.62■□□□□ 0.89
SHANK1-203ENST00000391813 WDR35Q9P2L0 1181 aa20.62■□□□□ 0.89
SHANK1-203ENST00000391813 ARHGEF28Q8N1W1 1705 aaKnown RBP20.62■□□□□ 0.89
SHANK1-203ENST00000391813 KIAA0391O15091 583 aaKnown RBP20.62■□□□□ 0.89
SHANK1-203ENST00000391813 ZBTB24O43167 697 aaPredicted RBP20.62■□□□□ 0.89
SHANK1-203ENST00000391813 CETPP11597 493 aa20.62■□□□□ 0.89
SHANK1-203ENST00000391813 DEFA1P59665 94 aa20.62■□□□□ 0.89
SHANK1-203ENST00000391813 DEFA3P59666 94 aa20.62■□□□□ 0.89
SHANK1-203ENST00000391813 MAP3K10Q02779 954 aa20.62■□□□□ 0.89
SHANK1-203ENST00000391813 EPHA7Q15375 998 aa20.62■□□□□ 0.89
SHANK1-203ENST00000391813 TTC39BQ5VTQ0 682 aaPredicted RBP20.62■□□□□ 0.89
SHANK1-203ENST00000391813 ITGB1BP2Q9UKP3 347 aa20.62■□□□□ 0.89
SHANK1-203ENST00000391813 PIGHQ14442 188 aaPredicted RBP20.61■□□□□ 0.89
SHANK1-203ENST00000391813 ITPRIPL1Q6GPH6 555 aa20.61■□□□□ 0.89
SHANK1-203ENST00000391813 PIK3R5Q8WYR1 880 aa20.61■□□□□ 0.89
SHANK1-203ENST00000391813 FAM210AQ96ND0 272 aa20.61■□□□□ 0.89
SHANK1-203ENST00000391813 ADAM33Q9BZ11 813 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms