RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 SCN1AP35498 2009 aa23.47■■□□□ 1.35
CCDC28B-201ENST00000373602 ZNF197O14709 1029 aa23.46■■□□□ 1.35
CCDC28B-201ENST00000373602 PI15O43692 258 aa23.46■■□□□ 1.35
CCDC28B-201ENST00000373602 MRE11P49959 708 aa23.46■■□□□ 1.35
CCDC28B-201ENST00000373602 WNT7BP56706 349 aa23.46■■□□□ 1.35
CCDC28B-201ENST00000373602 GPC5P78333 572 aa23.46■■□□□ 1.35
CCDC28B-201ENST00000373602 IQCEQ6IPM2 695 aa23.46■■□□□ 1.35
CCDC28B-201ENST00000373602 STXBP4Q6ZWJ1 553 aa23.46■■□□□ 1.35
CCDC28B-201ENST00000373602 SPRYD3Q8NCJ5 442 aa23.46■■□□□ 1.35
CCDC28B-201ENST00000373602 TCEAL4Q96EI5 215 aa23.46■■□□□ 1.35
CCDC28B-201ENST00000373602 BORCS6Q96GS4 357 aa23.46■■□□□ 1.35
CCDC28B-201ENST00000373602 PGLYRP2Q96PD5 576 aa23.46■■□□□ 1.35
CCDC28B-201ENST00000373602 ARHGEF3Q9NR81 526 aa23.46■■□□□ 1.35
CCDC28B-201ENST00000373602 DSEQ9UL01 958 aa23.46■■□□□ 1.35
CCDC28B-201ENST00000373602 YIPF1Q9Y548 306 aa23.46■■□□□ 1.35
CCDC28B-201ENST00000373602 CYB561D2O14569 222 aa23.45■■□□□ 1.34
CCDC28B-201ENST00000373602 EXTL3O43909 919 aa23.45■■□□□ 1.34
CCDC28B-201ENST00000373602 CCR2P41597 374 aa23.45■■□□□ 1.34
CCDC28B-201ENST00000373602 EPHA5P54756 1037 aa23.45■■□□□ 1.34
CCDC28B-201ENST00000373602 ASIC1P78348 528 aa23.45■■□□□ 1.34
CCDC28B-201ENST00000373602 DUSP4Q13115 394 aa23.45■■□□□ 1.34
CCDC28B-201ENST00000373602 CYP4A22Q5TCH4 519 aa23.45■■□□□ 1.34
CCDC28B-201ENST00000373602 CENPPQ6IPU0 288 aa23.45■■□□□ 1.34
CCDC28B-201ENST00000373602 ARMCX5Q6P1M9 558 aa23.45■■□□□ 1.34
CCDC28B-201ENST00000373602 PDZD4Q76G19 769 aaPredicted RBP23.45■■□□□ 1.34
CCDC28B-201ENST00000373602 HS6ST3Q8IZP7 471 aa23.45■■□□□ 1.34
CCDC28B-201ENST00000373602 LEMD2Q8NC56 503 aa23.45■■□□□ 1.34
CCDC28B-201ENST00000373602 GLIS3Q8NEA6 775 aa23.45■■□□□ 1.34
CCDC28B-201ENST00000373602 HPS3Q969F9 1004 aa23.45■■□□□ 1.34
CCDC28B-201ENST00000373602 TMEM209Q96SK2 561 aa23.45■■□□□ 1.34
CCDC28B-201ENST00000373602 PHOX2BQ99453 314 aa23.45■■□□□ 1.34
CCDC28B-201ENST00000373602 C7orf25Q9BPX7 421 aa23.45■■□□□ 1.34
CCDC28B-201ENST00000373602 KXD1Q9BQD3 176 aa23.45■■□□□ 1.34
CCDC28B-201ENST00000373602 CRISPLD1Q9H336 500 aa23.45■■□□□ 1.34
CCDC28B-201ENST00000373602 MAGEF1Q9HAY2 307 aa23.45■■□□□ 1.34
CCDC28B-201ENST00000373602 RBAKQ9NYW8 714 aaPredicted RBP23.45■■□□□ 1.34
CCDC28B-201ENST00000373602 CFAP45Q9UL16 551 aa23.45■■□□□ 1.34
CCDC28B-201ENST00000373602 TSC2P49815 1807 aa23.45■■□□□ 1.34
CCDC28B-201ENST00000373602 PIEZO1Q92508 2521 aa23.44■■□□□ 1.34
CCDC28B-201ENST00000373602 MTMR11A4FU01 709 aa23.44■■□□□ 1.34
CCDC28B-201ENST00000373602 GOLGA8IPA6NC78 632 aa23.44■■□□□ 1.34
CCDC28B-201ENST00000373602 GOLGA8JA6NMD2 632 aa23.44■■□□□ 1.34
CCDC28B-201ENST00000373602 H0Y858 1186 aa23.44■■□□□ 1.34
CCDC28B-201ENST00000373602 KIAA0391O15091 583 aaKnown RBP23.44■■□□□ 1.34
CCDC28B-201ENST00000373602 POLR2DO15514 142 aaKnown RBP23.44■■□□□ 1.34
CCDC28B-201ENST00000373602 ECI2O75521 394 aa23.44■■□□□ 1.34
CCDC28B-201ENST00000373602 PLD1Q13393 1074 aa23.44■■□□□ 1.34
CCDC28B-201ENST00000373602 PHLDB3Q6NSJ2 640 aa23.44■■□□□ 1.34
CCDC28B-201ENST00000373602 OR10T2Q8NGX3 314 aa23.44■■□□□ 1.34
CCDC28B-201ENST00000373602 PYM1Q9BRP8 204 aaKnown RBP23.44■■□□□ 1.34
CCDC28B-201ENST00000373602 PCIF1Q9H4Z3 704 aa23.44■■□□□ 1.34
CCDC28B-201ENST00000373602 TBC1D17Q9HA65 648 aa23.44■■□□□ 1.34
CCDC28B-201ENST00000373602 RCOR1Q9UKL0 485 aa23.44■■□□□ 1.34
CCDC28B-201ENST00000373602 WDFY4Q6ZS81 3184 aa23.44■■□□□ 1.34
CCDC28B-201ENST00000373602 CACNA1HO95180 2353 aa23.43■■□□□ 1.34
CCDC28B-201ENST00000373602 EIF3DO15371 548 aaKnown RBP eCLIP23.43■■□□□ 1.34
CCDC28B-201ENST00000373602 MOSPD3O75425 235 aa23.43■■□□□ 1.34
CCDC28B-201ENST00000373602 ME1P48163 572 aa23.43■■□□□ 1.34
CCDC28B-201ENST00000373602 TFAMQ00059 246 aaKnown RBP23.43■■□□□ 1.34
CCDC28B-201ENST00000373602 DNM1Q05193 864 aaKnown RBP23.43■■□□□ 1.34
CCDC28B-201ENST00000373602 SV2CQ496J9 727 aa23.43■■□□□ 1.34
CCDC28B-201ENST00000373602 RESP18Q5W5W9 173 aa23.43■■□□□ 1.34
CCDC28B-201ENST00000373602 METTL23Q86XA0 190 aa23.43■■□□□ 1.34
CCDC28B-201ENST00000373602 GPD1LQ8N335 351 aa23.43■■□□□ 1.34
CCDC28B-201ENST00000373602 ATAD1Q8NBU5 361 aa23.43■■□□□ 1.34
CCDC28B-201ENST00000373602 CACTINQ8WUQ7 758 aaKnown RBP23.43■■□□□ 1.34
CCDC28B-201ENST00000373602 ATOH1Q92858 354 aaPredicted RBP23.43■■□□□ 1.34
CCDC28B-201ENST00000373602 ZNF560Q96MR9 790 aa23.43■■□□□ 1.34
CCDC28B-201ENST00000373602 ASAH2Q9NR71 780 aa23.43■■□□□ 1.34
CCDC28B-201ENST00000373602 FAM13BQ9NYF5 915 aa23.43■■□□□ 1.34
CCDC28B-201ENST00000373602 HSFX1Q9UBD0 423 aa23.43■■□□□ 1.34
CCDC28B-201ENST00000373602 KPNA7A9QM74 516 aa23.42■■□□□ 1.34
CCDC28B-201ENST00000373602 STK25O00506 426 aa23.42■■□□□ 1.34
CCDC28B-201ENST00000373602 NRG2O14511 850 aaPredicted RBP23.42■■□□□ 1.34
CCDC28B-201ENST00000373602 RFX1P22670 979 aa23.42■■□□□ 1.34
CCDC28B-201ENST00000373602 HOXD13P35453 343 aa23.42■■□□□ 1.34
CCDC28B-201ENST00000373602 PNPLA4P41247 253 aa23.42■■□□□ 1.34
CCDC28B-201ENST00000373602 FAM26FQ5R3K3 315 aa23.42■■□□□ 1.34
CCDC28B-201ENST00000373602 WSCD1Q658N2 575 aa23.42■■□□□ 1.34
CCDC28B-201ENST00000373602 EPM2AIP1Q7L775 607 aaPredicted RBP23.42■■□□□ 1.34
CCDC28B-201ENST00000373602 CCDC105Q8IYK2 499 aa23.42■■□□□ 1.34
CCDC28B-201ENST00000373602 C1orf127Q8N9H9 656 aa23.42■■□□□ 1.34
CCDC28B-201ENST00000373602 ZNF507Q8TCN5 953 aa23.42■■□□□ 1.34
CCDC28B-201ENST00000373602 ZCWPW1Q9H0M4 648 aa23.42■■□□□ 1.34
CCDC28B-201ENST00000373602 DNAJC25Q9H1X3 360 aa23.42■■□□□ 1.34
CCDC28B-201ENST00000373602 FAM86C1Q9NVL1 165 aa23.42■■□□□ 1.34
CCDC28B-201ENST00000373602 SLC27A5Q9Y2P5 690 aa23.42■■□□□ 1.34
CCDC28B-201ENST00000373602 MYL4P12829 197 aa23.41■■□□□ 1.34
CCDC28B-201ENST00000373602 POLR2BP30876 1174 aaKnown RBP23.41■■□□□ 1.34
CCDC28B-201ENST00000373602 ALDH1A3P47895 512 aa23.41■■□□□ 1.34
CCDC28B-201ENST00000373602 EPHB3P54753 998 aa23.41■■□□□ 1.34
CCDC28B-201ENST00000373602 STARD6P59095 220 aa23.41■■□□□ 1.34
CCDC28B-201ENST00000373602 EHHADHQ08426 723 aa23.41■■□□□ 1.34
CCDC28B-201ENST00000373602 TANGO2Q6ICL3 276 aa23.41■■□□□ 1.34
CCDC28B-201ENST00000373602 UNC13DQ70J99 1090 aa23.41■■□□□ 1.34
CCDC28B-201ENST00000373602 THEM5Q8N1Q8 247 aa23.41■■□□□ 1.34
CCDC28B-201ENST00000373602 CXorf38Q8TB03 319 aa23.41■■□□□ 1.34
CCDC28B-201ENST00000373602 ELSPBP1Q96BH3 223 aa23.41■■□□□ 1.34
CCDC28B-201ENST00000373602 LRRC3Q9BY71 257 aa23.41■■□□□ 1.34
CCDC28B-201ENST00000373602 PLA2G2FQ9BZM2 168 aa23.41■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms