RNA–Protein interactions for RNA: ENST00000354071.7

BRCA1-202, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 4,497 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-202ENST00000354071 RPTORQ8N122 1335 aa1.91□□□□□ -2.1
BRCA1-202ENST00000354071 TMEM265A0A087WTH1 108 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 AREL1O15033 823 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 DNPH1O43598 174 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 VPS4BO75351 444 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 KRT38O76015 456 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 STC2O76061 302 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 A1BGP04217 495 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 FOSL1P15407 271 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 CHRM3P20309 590 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 PTPN7P35236 360 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 CASRP41180 1078 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 SLC11A2P49281 568 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 CARSP49589 748 aaKnown RBP1.9□□□□□ -2.1
BRCA1-202ENST00000354071 KCNQ1P51787 676 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 RRADP55042 308 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 CYP27A1Q02318 531 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 TBX2Q13207 712 aaPredicted RBP1.9□□□□□ -2.1
BRCA1-202ENST00000354071 MFSD14BQ5SR56 506 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 ARTNQ5T4W7 220 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 ANKS6Q68DC2 871 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 FAAH2Q6GMR7 532 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 BORAQ6PGQ7 559 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 GADL1Q6ZQY3 521 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 FAM47EQ6ZV65 393 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 GALNT5Q7Z7M9 940 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 CABP7Q86V35 215 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 FTSJ3Q8IY81 847 aaKnown RBP1.9□□□□□ -2.1
BRCA1-202ENST00000354071 SNX33Q8WV41 574 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 RUBCNQ92622 972 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 USP13Q92995 863 aaPredicted RBP1.9□□□□□ -2.1
BRCA1-202ENST00000354071 NKD2Q969F2 451 aaPredicted RBP1.9□□□□□ -2.1
BRCA1-202ENST00000354071 COG8Q96MW5 612 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 KATNAL1Q9BW62 490 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 NELFAQ9H3P2 528 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 RMI1Q9H9A7 625 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 IL21RQ9HBE5 538 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 FSCN3Q9NQT6 498 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 POLR3BQ9NW08 1133 aaPredicted RBP1.9□□□□□ -2.1
BRCA1-202ENST00000354071 ARHGAP20Q9P2F6 1191 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 KCND3Q9UK17 655 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 PADI4Q9UM07 663 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 DAPP1Q9UN19 280 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 SCRIBQ14160 1630 aa1.9□□□□□ -2.1
BRCA1-202ENST00000354071 PKD1L2Q7Z442 2459 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 FSD2A1L4K1 749 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 TSPY2A6NKD2 308 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 CNOT4O95628 575 aaKnown RBP1.9□□□□□ -2.11
BRCA1-202ENST00000354071 HNRNPA1P09651 372 aaKnown RBP eCLIP1.9□□□□□ -2.11
BRCA1-202ENST00000354071 TSPY3P0CV98 308 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 TSPY8P0CW00 308 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 NTSR1P30989 418 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 CCT4P50991 539 aaKnown RBP1.9□□□□□ -2.11
BRCA1-202ENST00000354071 PTTG1IPP53801 180 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 TSPY1Q01534 308 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 APBA1Q02410 837 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 CPSF6Q16630 551 aaKnown RBP eCLIP1.9□□□□□ -2.11
BRCA1-202ENST00000354071 ALDH1L2Q3SY69 923 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 CYP4F22Q6NT55 531 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 ENOSF1Q7L5Y1 443 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 XYLT1Q86Y38 959 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 DNAJC5GQ8N7S2 189 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 DTX3Q8N9I9 347 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 PPP1R14CQ8TAE6 165 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 FAM71BQ8TC56 605 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 IGDCC4Q8TDY8 1250 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 ARHGAP39Q9C0H5 1083 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 PCDHAC1Q9H158 963 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 WNT8AQ9H1J5 351 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 PABPC3Q9H361 631 aaKnown RBP1.9□□□□□ -2.11
BRCA1-202ENST00000354071 TAF1DQ9H5J8 278 aaPredicted RBP1.9□□□□□ -2.11
BRCA1-202ENST00000354071 PLEKHA5Q9HAU0 1116 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 SARS2Q9NP81 518 aaKnown RBP1.9□□□□□ -2.11
BRCA1-202ENST00000354071 PIM2Q9P1W9 311 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 FBXO2Q9UK22 296 aaPredicted RBP1.9□□□□□ -2.11
BRCA1-202ENST00000354071 AFG3L2Q9Y4W6 797 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 PNPLA7Q6ZV29 1317 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 ATRNL1Q5VV63 1379 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 NISCHQ9Y2I1 1504 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 ISM1B1AKI9 464 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 E9PLN8 166 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 PCDH17O14917 1159 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 KIAA0391O15091 583 aaKnown RBP1.9□□□□□ -2.11
BRCA1-202ENST00000354071 RASSF9O75901 435 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 BAIAP3O94812 1187 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 ERBB2P04626 1255 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 THP07101 528 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 ANXA2P07355 339 aaKnown RBP1.9□□□□□ -2.11
BRCA1-202ENST00000354071 ACTN2P35609 894 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 GGT5P36269 586 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 CASP2P42575 452 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 IL12RB1P42701 662 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 PIK3CGP48736 1102 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 DCAF7P61962 342 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 SMAD4Q13485 552 aaKnown RBP1.9□□□□□ -2.11
BRCA1-202ENST00000354071 GRM4Q14833 912 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 RAB3GAP1Q15042 981 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 TSTQ16762 297 aaKnown RBP1.9□□□□□ -2.11
BRCA1-202ENST00000354071 ZNF827Q17R98 1081 aa1.9□□□□□ -2.11
BRCA1-202ENST00000354071 SPECC1Q5M775 1068 aa1.9□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms