RNA–Protein interactions for RNA: ENST00000342245.8

SMPD1-201, Transcript of sphingomyelin phosphodiesterase 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMPD1, Length 2,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD1-201ENST00000342245 TMEM53Q6P2H8 277 aa19.52■□□□□ 0.72
SMPD1-201ENST00000342245 ARPINQ7Z6K5 226 aa19.52■□□□□ 0.72
SMPD1-201ENST00000342245 C4orf33Q8N1A6 199 aa19.52■□□□□ 0.72
SMPD1-201ENST00000342245 ICA1LQ8NDH6 482 aa19.52■□□□□ 0.72
SMPD1-201ENST00000342245 PLEKHO2Q8TD55 490 aa19.52■□□□□ 0.72
SMPD1-201ENST00000342245 C9orf72Q96LT7 481 aa19.52■□□□□ 0.72
SMPD1-201ENST00000342245 CYTH2Q99418 400 aa19.52■□□□□ 0.72
SMPD1-201ENST00000342245 HNRNPABQ99729 332 aaKnown RBP19.52■□□□□ 0.72
SMPD1-201ENST00000342245 CRNKL1Q9BZJ0 848 aaKnown RBP19.52■□□□□ 0.72
SMPD1-201ENST00000342245 DDX18Q9NVP1 670 aaKnown RBP19.52■□□□□ 0.72
SMPD1-201ENST00000342245 EFR3BQ9Y2G0 817 aa19.52■□□□□ 0.72
SMPD1-201ENST00000342245 CICQ96RK0 1608 aaPredicted RBP19.52■□□□□ 0.72
SMPD1-201ENST00000342245 MATN2O00339 956 aa19.51■□□□□ 0.71
SMPD1-201ENST00000342245 DENRO43583 198 aaKnown RBP19.51■□□□□ 0.71
SMPD1-201ENST00000342245 TRMUO75648 421 aaKnown RBP19.51■□□□□ 0.71
SMPD1-201ENST00000342245 FTLP02792 175 aaPredicted RBP19.51■□□□□ 0.71
SMPD1-201ENST00000342245 TFAP2AP05549 437 aa19.51■□□□□ 0.71
SMPD1-201ENST00000342245 LPIN1Q14693 890 aa19.51■□□□□ 0.71
SMPD1-201ENST00000342245 ITPKCQ96DU7 683 aa19.51■□□□□ 0.71
SMPD1-201ENST00000342245 DNAJC5Q9H3Z4 198 aa19.51■□□□□ 0.71
SMPD1-201ENST00000342245 TMOD3Q9NYL9 352 aa19.51■□□□□ 0.71
SMPD1-201ENST00000342245 TAS2R14Q9NYV8 317 aa19.51■□□□□ 0.71
SMPD1-201ENST00000342245 CACNA1SQ13698 1873 aa19.51■□□□□ 0.71
SMPD1-201ENST00000342245 SPATA31A1Q5TZJ5 1347 aa19.51■□□□□ 0.71
SMPD1-201ENST00000342245 CCDC162PA2VCL2 907 aa19.51■□□□□ 0.71
SMPD1-201ENST00000342245 NR3C1P04150 777 aa19.51■□□□□ 0.71
SMPD1-201ENST00000342245 DYNLL1P63167 89 aaKnown RBP19.51■□□□□ 0.71
SMPD1-201ENST00000342245 SFT2D3Q587I9 215 aa19.51■□□□□ 0.71
SMPD1-201ENST00000342245 PCNX4Q63HM2 1172 aa19.51■□□□□ 0.71
SMPD1-201ENST00000342245 C1orf54Q8WWF1 131 aa19.51■□□□□ 0.71
SMPD1-201ENST00000342245 RBM15Q96T37 977 aaKnown RBP eCLIP19.51■□□□□ 0.71
SMPD1-201ENST00000342245 TCHPQ9BT92 498 aa19.51■□□□□ 0.71
SMPD1-201ENST00000342245 PLGRKTQ9HBL7 147 aa19.51■□□□□ 0.71
SMPD1-201ENST00000342245 ARHGEF4Q9NR80 690 aa19.51■□□□□ 0.71
SMPD1-201ENST00000342245 SLC7A8Q9UHI5 535 aa19.51■□□□□ 0.71
SMPD1-201ENST00000342245 TAGLN3Q9UI15 199 aa19.51■□□□□ 0.71
SMPD1-201ENST00000342245 FAF1Q9UNN5 650 aaPredicted RBP19.51■□□□□ 0.71
SMPD1-201ENST00000342245 H3BRJ5 948 aa19.5■□□□□ 0.71
SMPD1-201ENST00000342245 MAGEB3O15480 346 aa19.5■□□□□ 0.71
SMPD1-201ENST00000342245 STK10O94804 968 aaKnown RBP19.5■□□□□ 0.71
SMPD1-201ENST00000342245 PIK3CAP42336 1068 aa19.5■□□□□ 0.71
SMPD1-201ENST00000342245 COG7P83436 770 aa19.5■□□□□ 0.71
SMPD1-201ENST00000342245 MSLNQ13421 630 aaPredicted RBP19.5■□□□□ 0.71
SMPD1-201ENST00000342245 BMT2Q1RMZ1 405 aa19.5■□□□□ 0.71
SMPD1-201ENST00000342245 SLC35G1Q2M3R5 365 aa19.5■□□□□ 0.71
SMPD1-201ENST00000342245 TMEM110Q86TL2 294 aa19.5■□□□□ 0.71
SMPD1-201ENST00000342245 ALLCQ8N6M5 410 aa19.5■□□□□ 0.71
SMPD1-201ENST00000342245 KCNK13Q9HB14 408 aa19.5■□□□□ 0.71
SMPD1-201ENST00000342245 PGM3O95394 542 aa19.5■□□□□ 0.71
SMPD1-201ENST00000342245 FGFR1P11362 822 aa19.5■□□□□ 0.71
SMPD1-201ENST00000342245 NADK2Q4G0N4 442 aa19.5■□□□□ 0.71
SMPD1-201ENST00000342245 PACS1Q6VY07 963 aa19.5■□□□□ 0.71
SMPD1-201ENST00000342245 CHSY1Q86X52 802 aa19.5■□□□□ 0.71
SMPD1-201ENST00000342245 FBXO6Q9NRD1 293 aaPredicted RBP19.5■□□□□ 0.71
SMPD1-201ENST00000342245 ZNF180Q9UJW8 692 aa19.5■□□□□ 0.71
SMPD1-201ENST00000342245 PADI4Q9UM07 663 aa19.5■□□□□ 0.71
SMPD1-201ENST00000342245 HBS1LQ9Y450 684 aaKnown RBP19.5■□□□□ 0.71
SMPD1-201ENST00000342245 FADS3Q9Y5Q0 445 aa19.5■□□□□ 0.71
SMPD1-201ENST00000342245 POC1B-GALNT4F8VUJ3 575 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 BOLA2-SMG1P6H3BVE0 249 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 SLC37A4O43826 429 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 DLDP09622 509 aaKnown RBP19.49■□□□□ 0.71
SMPD1-201ENST00000342245 PLS3P13797 630 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 PAX3P23760 479 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 ECM1Q16610 540 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 SYCP2LQ5T4T6 812 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 IZUMO3Q5VZ72 239 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 ERI1Q8IV48 349 aaKnown RBP19.49■□□□□ 0.71
SMPD1-201ENST00000342245 RBM15BQ8NDT2 890 aaKnown RBP19.49■□□□□ 0.71
SMPD1-201ENST00000342245 BIRC8Q96P09 236 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 EIF2AQ9BY44 585 aaKnown RBP19.49■□□□□ 0.71
SMPD1-201ENST00000342245 GPR88Q9GZN0 384 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 APEX2Q9UBZ4 518 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 CAPN14A8MX76 684 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 CASQ2O14958 399 aaPredicted RBP19.49■□□□□ 0.71
SMPD1-201ENST00000342245 CLDN3O15551 220 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 SERPINB7O75635 380 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 TNFAIP8O95379 198 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 SLC1A1P43005 524 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 TFAP4Q01664 338 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 OVGP1Q12889 678 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 CLPPQ16740 277 aaPredicted RBP19.49■□□□□ 0.71
SMPD1-201ENST00000342245 DHRS4L2Q6PKH6 230 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 RFX8Q6ZV50 586 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 ANO5Q75V66 913 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 AHI1Q8N157 1196 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 ZNF276Q8N554 614 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 ZFP28Q8NHY6 868 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 DEPTORQ8TB45 409 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 PIGBQ92521 554 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 THTPAQ9BU02 230 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 DCLK3Q9C098 648 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 DCP1AQ9NPI6 582 aaPredicted RBP19.49■□□□□ 0.71
SMPD1-201ENST00000342245 IL17RBQ9NRM6 502 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 LRRC4BQ9NT99 713 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 KCNK4Q9NYG8 393 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 TRMT112Q9UI30 125 aaKnown RBP19.49■□□□□ 0.71
SMPD1-201ENST00000342245 AK5Q9Y6K8 562 aa19.49■□□□□ 0.71
SMPD1-201ENST00000342245 GZMAP12544 262 aa19.48■□□□□ 0.71
SMPD1-201ENST00000342245 AQP4P55087 323 aa19.48■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms