RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 PRPF4O43172 522 aaKnown RBP eCLIP8.88□□□□□ -0.99
HMGB1-203ENST00000341423 SRGAP2O75044 1071 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 NOP14P78316 857 aaKnown RBP8.88□□□□□ -0.99
HMGB1-203ENST00000341423 TGM3Q08188 693 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 XRCC4Q13426 336 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 PDGFRLQ15198 375 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 DBN1Q16643 649 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 FAAH2Q6GMR7 532 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 TAB3Q8N5C8 712 aaPredicted RBP8.88□□□□□ -0.99
HMGB1-203ENST00000341423 ERLEC1Q96DZ1 483 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 STK33Q9BYT3 514 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 GPR63Q9BZJ6 419 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 STK17AQ9UEE5 414 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 UNC13BO14795 1591 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 ARHGAP10A1A4S6 786 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 SNX2O60749 519 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 BCAT1P54687 386 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 IL1RL1Q01638 556 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 ITPRIPL2Q3MIP1 535 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 OR14C36Q8NHC7 312 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 RASGRP4Q8TDF6 673 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 SIPA1Q96FS4 1042 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 PDCD2LQ9BRP1 358 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 EFHD1Q9BUP0 239 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 UBXN6Q9BZV1 441 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 FAM124BQ9H5Z6 455 aaPredicted RBP8.88□□□□□ -0.99
HMGB1-203ENST00000341423 TEKT2Q9UIF3 430 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 WDR19Q8NEZ3 1342 aa8.88□□□□□ -0.99
HMGB1-203ENST00000341423 CCDC195A0A1B0GUA6 201 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 AXIN1O15169 862 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 CER1O95813 267 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 RPL17P18621 184 aaKnown RBP8.87□□□□□ -0.99
HMGB1-203ENST00000341423 PAMP19021 973 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 AGXTP21549 392 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 ACADSBP45954 432 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 POLR2LP62875 67 aaKnown RBP8.87□□□□□ -0.99
HMGB1-203ENST00000341423 SEMG2Q02383 582 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 ILF3Q12906 894 aaKnown RBP eCLIP8.87□□□□□ -0.99
HMGB1-203ENST00000341423 PHLDB2Q86SQ0 1253 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 KIAA2013Q8IYS2 634 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 ATP11CQ8NB49 1132 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 METTL21AQ8WXB1 218 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 VMP1Q96GC9 406 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 FBXL18Q96ME1 805 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 MAGEF1Q9HAY2 307 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 PXMP2Q9NR77 195 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 RAD18Q9NS91 495 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 IGF2BP3O00425 579 aaKnown RBP eCLIP8.87□□□□□ -0.99
HMGB1-203ENST00000341423 DARSP14868 501 aaKnown RBP8.87□□□□□ -0.99
HMGB1-203ENST00000341423 ACO1P21399 889 aaKnown RBP8.87□□□□□ -0.99
HMGB1-203ENST00000341423 SCNN1GP51170 649 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 ISM2Q6H9L7 571 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 SKAP1Q86WV1 359 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 CLEC10AQ8IUN9 316 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 MFN1Q8IWA4 741 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 PROM2Q8N271 834 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 XXYLT1Q8NBI6 393 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 ATP2A3Q93084 1043 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 NUDCD1Q96RS6 583 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 AFF4Q9UHB7 1163 aaKnown RBP8.87□□□□□ -0.99
HMGB1-203ENST00000341423 SNCAIPQ9Y6H5 919 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 HSF2BPO75031 334 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 FGF18O76093 207 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 PLA2G4BP0C869 781 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 LCP1P13796 627 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 COL9A1P20849 921 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 PTPN3P26045 913 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 BMPR1AP36894 532 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 CCL14Q16627 93 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 ZNF655Q8N720 491 aaPredicted RBP8.87□□□□□ -0.99
HMGB1-203ENST00000341423 KRT12Q99456 494 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 NAP1L3Q99457 506 aaPredicted RBP8.87□□□□□ -0.99
HMGB1-203ENST00000341423 GDF3Q9NR23 364 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 HACD3Q9P035 362 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 Q9Y3F1 56 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 STARD13Q9Y3M8 1113 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 BZW2Q9Y6E2 419 aaKnown RBP8.87□□□□□ -0.99
HMGB1-203ENST00000341423 ZSCAN5CA6NGD5 496 aaPredicted RBP8.87□□□□□ -0.99
HMGB1-203ENST00000341423 CREB3O43889 395 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 ORC4O43929 436 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 LMNAP02545 664 aaKnown RBP8.87□□□□□ -0.99
HMGB1-203ENST00000341423 PAPOLAP51003 745 aaKnown RBP8.87□□□□□ -0.99
HMGB1-203ENST00000341423 SMAD3P84022 425 aaKnown RBP8.87□□□□□ -0.99
HMGB1-203ENST00000341423 CKAP4Q07065 602 aaKnown RBP8.87□□□□□ -0.99
HMGB1-203ENST00000341423 CDO1Q16878 200 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 XKR4Q5GH76 650 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 IL27RAQ6UWB1 636 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 TAF8Q7Z7C8 310 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 LZTR1Q8N653 840 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 MYOCQ99972 504 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 LLPHQ9BRT6 129 aaKnown RBP8.87□□□□□ -0.99
HMGB1-203ENST00000341423 DRC3Q9H069 523 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 KCNH7Q9NS40 1196 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 TMEM161AQ9NX61 479 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 TEX33O43247 280 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 RHOAP61586 193 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 HNRNPDQ14103 355 aaKnown RBP8.87□□□□□ -0.99
HMGB1-203ENST00000341423 C10orf76Q5T2E6 689 aa8.87□□□□□ -0.99
HMGB1-203ENST00000341423 SDCCAG8Q86SQ7 713 aaPredicted RBP8.87□□□□□ -0.99
HMGB1-203ENST00000341423 NXPE3Q969Y0 559 aa8.87□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms