RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 TCERG1LQ5VWI1 586 aa17.1■□□□□ 0.33
CCDC28A-201ENST00000332797 OVOS1Q6IE37 1185 aa17.1■□□□□ 0.33
CCDC28A-201ENST00000332797 FILIP1Q7Z7B0 1213 aa17.1■□□□□ 0.33
CCDC28A-201ENST00000332797 CLEC1BQ9P126 229 aa17.1■□□□□ 0.33
CCDC28A-201ENST00000332797 ARMCX3Q9UH62 379 aaPredicted RBP17.1■□□□□ 0.33
CCDC28A-201ENST00000332797 DSEQ9UL01 958 aa17.1■□□□□ 0.33
CCDC28A-201ENST00000332797 SNX9Q9Y5X1 595 aa17.1■□□□□ 0.33
CCDC28A-201ENST00000332797 SPDYE4A6NLX3 237 aa17.09■□□□□ 0.33
CCDC28A-201ENST00000332797 HUS1O60921 280 aa17.09■□□□□ 0.33
CCDC28A-201ENST00000332797 SPATA31D3P0C874 917 aa17.09■□□□□ 0.33
CCDC28A-201ENST00000332797 GCLMP48507 274 aa17.09■□□□□ 0.33
CCDC28A-201ENST00000332797 ARPP19P56211 112 aa17.09■□□□□ 0.33
CCDC28A-201ENST00000332797 MYL6P60660 151 aa17.09■□□□□ 0.33
CCDC28A-201ENST00000332797 PPP3CAQ08209 521 aa17.09■□□□□ 0.33
CCDC28A-201ENST00000332797 NCOA4Q13772 614 aa17.09■□□□□ 0.33
CCDC28A-201ENST00000332797 ZACNQ401N2 412 aa17.09■□□□□ 0.33
CCDC28A-201ENST00000332797 SASS6Q6UVJ0 657 aa17.09■□□□□ 0.33
CCDC28A-201ENST00000332797 TMEM184AQ6ZMB5 413 aa17.09■□□□□ 0.33
CCDC28A-201ENST00000332797 SPATA31D4Q6ZUB0 917 aa17.09■□□□□ 0.33
CCDC28A-201ENST00000332797 SV2AQ7L0J3 742 aa17.09■□□□□ 0.33
CCDC28A-201ENST00000332797 METTL23Q86XA0 190 aa17.09■□□□□ 0.33
CCDC28A-201ENST00000332797 SYAP1Q96A49 352 aaPredicted RBP17.09■□□□□ 0.33
CCDC28A-201ENST00000332797 SRRTQ9BXP5 876 aaKnown RBP17.09■□□□□ 0.33
CCDC28A-201ENST00000332797 GDAP2Q9NXN4 497 aa17.09■□□□□ 0.33
CCDC28A-201ENST00000332797 FBXL5Q9UKA1 691 aa17.09■□□□□ 0.33
CCDC28A-201ENST00000332797 TGM5O43548 720 aa17.08■□□□□ 0.32
CCDC28A-201ENST00000332797 STX10O60499 249 aa17.08■□□□□ 0.32
CCDC28A-201ENST00000332797 OAZ2O95190 189 aa17.08■□□□□ 0.32
CCDC28A-201ENST00000332797 VNN1O95497 513 aa17.08■□□□□ 0.32
CCDC28A-201ENST00000332797 CYP11A1P05108 521 aa17.08■□□□□ 0.32
CCDC28A-201ENST00000332797 PIK3CAP42336 1068 aa17.08■□□□□ 0.32
CCDC28A-201ENST00000332797 KLHL40Q2TBA0 621 aa17.08■□□□□ 0.32
CCDC28A-201ENST00000332797 WSCD1Q658N2 575 aa17.08■□□□□ 0.32
CCDC28A-201ENST00000332797 ANKRD54Q6NXT1 300 aa17.08■□□□□ 0.32
CCDC28A-201ENST00000332797 MED15Q96RN5 788 aa17.08■□□□□ 0.32
CCDC28A-201ENST00000332797 METTL14Q9HCE5 456 aaKnown RBP17.08■□□□□ 0.32
CCDC28A-201ENST00000332797 MAN1C1Q9NR34 630 aa17.08■□□□□ 0.32
CCDC28A-201ENST00000332797 DZANK1Q9NVP4 752 aa17.08■□□□□ 0.32
CCDC28A-201ENST00000332797 L1RE1Q9UN81 338 aa17.08■□□□□ 0.32
CCDC28A-201ENST00000332797 TBC1D4O60343 1298 aa17.07■□□□□ 0.32
CCDC28A-201ENST00000332797 FGFR1OPO95684 399 aaKnown RBP17.07■□□□□ 0.32
CCDC28A-201ENST00000332797 ATICP31939 592 aa17.07■□□□□ 0.32
CCDC28A-201ENST00000332797 ROR1Q01973 937 aa17.07■□□□□ 0.32
CCDC28A-201ENST00000332797 RAB33AQ14088 237 aa17.07■□□□□ 0.32
CCDC28A-201ENST00000332797 TPD52L1Q16890 204 aaPredicted RBP17.07■□□□□ 0.32
CCDC28A-201ENST00000332797 ZNF699Q32M78 642 aa17.07■□□□□ 0.32
CCDC28A-201ENST00000332797 SLC8B1Q6J4K2 584 aa17.07■□□□□ 0.32
CCDC28A-201ENST00000332797 C15orf39Q6ZRI6 1047 aa17.07■□□□□ 0.32
CCDC28A-201ENST00000332797 FRMD5Q7Z6J6 570 aa17.07■□□□□ 0.32
CCDC28A-201ENST00000332797 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.07■□□□□ 0.32
CCDC28A-201ENST00000332797 PDCL2Q8N4E4 241 aa17.07■□□□□ 0.32
CCDC28A-201ENST00000332797 MSLNLQ96KJ4 702 aa17.07■□□□□ 0.32
CCDC28A-201ENST00000332797 APOL5Q9BWW9 433 aa17.07■□□□□ 0.32
CCDC28A-201ENST00000332797 TMEM8AQ9HCN3 771 aa17.07■□□□□ 0.32
CCDC28A-201ENST00000332797 CD207Q9UJ71 328 aa17.07■□□□□ 0.32
CCDC28A-201ENST00000332797 GNA14O95837 355 aa17.06■□□□□ 0.32
CCDC28A-201ENST00000332797 HLA-DRAP01903 254 aa17.06■□□□□ 0.32
CCDC28A-201ENST00000332797 CPB1P15086 417 aa17.06■□□□□ 0.32
CCDC28A-201ENST00000332797 ERCC5P28715 1186 aaPredicted RBP17.06■□□□□ 0.32
CCDC28A-201ENST00000332797 GTF2H1P32780 548 aa17.06■□□□□ 0.32
CCDC28A-201ENST00000332797 MXI1P50539 228 aa17.06■□□□□ 0.32
CCDC28A-201ENST00000332797 MCCD1P59942 119 aaPredicted RBP17.06■□□□□ 0.32
CCDC28A-201ENST00000332797 TNNC1P63316 161 aa17.06■□□□□ 0.32
CCDC28A-201ENST00000332797 STX1AQ16623 288 aa17.06■□□□□ 0.32
CCDC28A-201ENST00000332797 AAK1Q2M2I8 961 aa17.06■□□□□ 0.32
CCDC28A-201ENST00000332797 WDR72Q3MJ13 1102 aa17.06■□□□□ 0.32
CCDC28A-201ENST00000332797 LEXMQ3ZCV2 418 aa17.06■□□□□ 0.32
CCDC28A-201ENST00000332797 LILRA6Q6PI73 481 aa17.06■□□□□ 0.32
CCDC28A-201ENST00000332797 ELMSAN1Q6PJG2 1045 aa17.06■□□□□ 0.32
CCDC28A-201ENST00000332797 ADGRF2Q8IZF7 708 aa17.06■□□□□ 0.32
CCDC28A-201ENST00000332797 TOP6BLQ8N6T0 577 aa17.06■□□□□ 0.32
CCDC28A-201ENST00000332797 ELMO3Q96BJ8 720 aa17.06■□□□□ 0.32
CCDC28A-201ENST00000332797 MMS19Q96T76 1030 aa17.06■□□□□ 0.32
CCDC28A-201ENST00000332797 OXCT2Q9BYC2 517 aaPredicted RBP17.06■□□□□ 0.32
CCDC28A-201ENST00000332797 XYLT2Q9H1B5 865 aa17.06■□□□□ 0.32
CCDC28A-201ENST00000332797 ANO10Q9NW15 660 aa17.06■□□□□ 0.32
CCDC28A-201ENST00000332797 NXF1Q9UBU9 619 aaKnown RBP17.06■□□□□ 0.32
CCDC28A-201ENST00000332797 DPP7Q9UHL4 492 aa17.06■□□□□ 0.32
CCDC28A-201ENST00000332797 WDR27A2RRH5 827 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 OR6C75A6NL08 312 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 STAU1O95793 577 aaKnown RBP17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 OR4Q2P0C623 313 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 MRPS5P82675 430 aaKnown RBP17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 SOWAHAQ2M3V2 549 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 KRT39Q6A163 491 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 THEM5Q8N1Q8 247 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 TMEM86AQ8N2M4 240 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 C12orf76Q8N812 135 aaPredicted RBP17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 KREMEN2Q8NCW0 462 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 TAS1R2Q8TE23 839 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 ATXN2LQ8WWM7 1075 aaKnown RBP17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 SLC35C1Q96A29 364 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 UTP3Q9NQZ2 479 aaKnown RBP eCLIP17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 FBXW11Q9UKB1 542 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 POLIQ9UNA4 740 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 BRWD1Q9NSI6 2320 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 C1RP00736 705 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 CCDC192P0DO97 292 aa17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 HOXB8P17481 243 aaPredicted RBP17.05■□□□□ 0.32
CCDC28A-201ENST00000332797 KCNQ1P51787 676 aa17.05■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms