RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 ZNF555Q8NEP9 628 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 RBM46Q8TBY0 533 aaKnown RBP12.06□□□□□ -0.48
VPS39-201ENST00000318006 ZKSCAN4Q969J2 545 aaPredicted RBP12.06□□□□□ -0.48
VPS39-201ENST00000318006 TMA16Q96EY4 203 aaKnown RBP12.06□□□□□ -0.48
VPS39-201ENST00000318006 ASPSCR1Q9BZE9 553 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 PLAGL2Q9UPG8 496 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 C19orf81C9J6K1 198 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 STAT5BP51692 787 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 POU5F1BQ06416 359 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 SEC23AQ15436 765 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 PREPLQ4J6C6 727 aaPredicted RBP12.06□□□□□ -0.48
VPS39-201ENST00000318006 HEATR6Q6AI08 1181 aaKnown RBP12.06□□□□□ -0.48
VPS39-201ENST00000318006 KCTD17Q8N5Z5 321 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 ZNF280CQ8ND82 737 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 CATSPER2Q96P56 530 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 HSPBP1Q9NZL4 362 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 PCSK1NQ9UHG2 260 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 KIAA0391O15091 583 aaKnown RBP12.06□□□□□ -0.48
VPS39-201ENST00000318006 ATP9AO75110 1047 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 NR3C2P08235 984 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 MYL3P08590 195 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 ZNF200P98182 395 aaPredicted RBP12.06□□□□□ -0.48
VPS39-201ENST00000318006 CAPRIN1Q14444 709 aaKnown RBP12.06□□□□□ -0.48
VPS39-201ENST00000318006 DUOXA2Q1HG44 320 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 SETD3Q86TU7 594 aaPredicted RBP12.06□□□□□ -0.48
VPS39-201ENST00000318006 CYGBQ8WWM9 190 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 SH2D3AQ9BRG2 576 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 MRGBPQ9NV56 204 aa12.06□□□□□ -0.48
VPS39-201ENST00000318006 SPDYE2BA6NHP3 402 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 AIM2O14862 343 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 SPDYE6P0CI01 402 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 SERPINB9P50453 376 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 ITGA8P53708 1063 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 KCNV1Q6PIU1 500 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 RCOR2Q8IZ40 523 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 FUKQ8N0W3 1084 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 BEST2Q8NFU1 509 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 RNF139Q8WU17 664 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 RIT2Q99578 217 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 RXFP1Q9HBX9 757 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 PARVAQ9NVD7 372 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 APEX2Q9UBZ4 518 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 LRCH1Q9Y2L9 728 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 GYS1P13807 737 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 FMO5P49326 533 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 TAP1Q03518 808 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 TRIM65Q6PJ69 517 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 ZNF668Q96K58 619 aaPredicted RBP12.05□□□□□ -0.48
VPS39-201ENST00000318006 RMDN2Q96LZ7 410 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 FAM8A1Q9UBU6 413 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 POLLQ9UGP5 575 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 HPSEQ9Y251 543 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 SPAG6O75602 509 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 FAM200BP0CF97 657 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 HSPA1AP0DMV8 641 aaKnown RBP12.05□□□□□ -0.48
VPS39-201ENST00000318006 HSPA1BP0DMV9 641 aaKnown RBP12.05□□□□□ -0.48
VPS39-201ENST00000318006 MYBP10242 640 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 PTK7Q13308 1070 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 R3HDM1Q15032 1099 aaKnown RBP12.05□□□□□ -0.48
VPS39-201ENST00000318006 TRIM60Q495X7 471 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 SWT1Q5T5J6 900 aaKnown RBP12.05□□□□□ -0.48
VPS39-201ENST00000318006 FASTKD5Q7L8L6 764 aaKnown RBP12.05□□□□□ -0.48
VPS39-201ENST00000318006 TTC39CQ8N584 583 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 NMD3Q96D46 503 aaKnown RBP12.05□□□□□ -0.48
VPS39-201ENST00000318006 CNBD2Q96M20 576 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 HEY2Q9UBP5 337 aa12.05□□□□□ -0.48
VPS39-201ENST00000318006 ASB14A6NK59 587 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 MAP2K7O14733 419 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 CYP26A1O43174 497 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 HUS1O60921 280 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 CLPTM1O96005 669 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 COPAP53621 1224 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 NLRP11P59045 1033 aaKnown RBP12.04□□□□□ -0.48
VPS39-201ENST00000318006 WASHC2DQ5SRD0 308 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 WLSQ5T9L3 541 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 TWF2Q6IBS0 349 aaKnown RBP12.04□□□□□ -0.48
VPS39-201ENST00000318006 GPR141Q7Z602 305 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 TXNRD3Q86VQ6 643 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 E2F7Q96AV8 911 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 ZNF446Q9NWS9 450 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 ANGPT2O15123 496 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 CAND2O75155 1236 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 WDR47O94967 919 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 KLK7P49862 253 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 TOB1P50616 345 aaPredicted RBP12.04□□□□□ -0.48
VPS39-201ENST00000318006 NUP107P57740 925 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 MAPK7Q13164 816 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 TSTA3Q13630 321 aaPredicted RBP12.04□□□□□ -0.48
VPS39-201ENST00000318006 NTRK3Q16288 839 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 TKFCQ3LXA3 575 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 TTC33Q6PID6 262 aaPredicted RBP12.04□□□□□ -0.48
VPS39-201ENST00000318006 MTHFD1LQ6UB35 978 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 FBXL16Q8N461 479 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 CDC26Q8NHZ8 85 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 MXRA8Q9BRK3 442 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 CPSF3Q9UKF6 684 aaKnown RBP12.04□□□□□ -0.48
VPS39-201ENST00000318006 TYW5A2RUC4 315 aaKnown RBP12.04□□□□□ -0.48
VPS39-201ENST00000318006 HNRNPCL2B2RXH8 293 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 PTPN4P29074 926 aa12.04□□□□□ -0.48
VPS39-201ENST00000318006 EIF3EP60228 445 aaKnown RBP12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms