RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 KRT78Q8N1N4 520 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 RIN3Q8TB24 985 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 DMAP1Q9NPF5 467 aaPredicted RBP14.48□□□□□ -0.09
CSPG4-201ENST00000308508 APEX2Q9UBZ4 518 aa14.48□□□□□ -0.09
CSPG4-201ENST00000308508 SNPHO15079 494 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 ZNF23P17027 643 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 ADORA2BP29275 332 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 COX10Q12887 443 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 BTBD8Q5XKL5 378 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 MAGEB18Q96M61 343 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 ZCCHC18P0CG32 403 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 FCGR1AP12314 374 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 KCNA6P17658 529 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 SLC16A1P53985 500 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 C12orf60Q5U649 245 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 RMDN3Q96TC7 470 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 FRMD8Q9BZ67 464 aaPredicted RBP14.47□□□□□ -0.09
CSPG4-201ENST00000308508 RPAP3Q9H6T3 665 aaPredicted RBP14.47□□□□□ -0.09
CSPG4-201ENST00000308508 LATS2Q9NRM7 1088 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 PEX5P50542 639 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 E4F1Q66K89 784 aaPredicted RBP14.47□□□□□ -0.09
CSPG4-201ENST00000308508 BARGINQ6ZT62 677 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 ERP44Q9BS26 406 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 ILKAPQ9H0C8 392 aaPredicted RBP14.47□□□□□ -0.09
CSPG4-201ENST00000308508 POTEFA5A3E0 1075 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 POTEIP0CG38 1075 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 FAM98CQ17RN3 349 aaKnown RBP14.47□□□□□ -0.09
CSPG4-201ENST00000308508 POTEGQ6S5H5 508 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 POTEEQ6S8J3 1075 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 FAM45AQ8TCE6 357 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 TNIP3Q96KP6 325 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 RAD51CO43502 376 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 CALB2P22676 271 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 PTK6Q13882 451 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 ZNF302Q9NR11 478 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 FAM217BQ9NTX9 383 aaPredicted RBP14.47□□□□□ -0.09
CSPG4-201ENST00000308508 CFAP99D6REC4 459 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 SERPIND1P05546 499 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 THRAP10827 490 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 LCP1P13796 627 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 SARSP49591 514 aaKnown RBP14.47□□□□□ -0.09
CSPG4-201ENST00000308508 CENPCQ03188 943 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 TAF2Q6P1X5 1199 aa14.47□□□□□ -0.09
CSPG4-201ENST00000308508 NMD3Q96D46 503 aaKnown RBP14.47□□□□□ -0.09
CSPG4-201ENST00000308508 ZFRQ96KR1 1074 aaKnown RBP14.47□□□□□ -0.09
CSPG4-201ENST00000308508 TBKBP1A7MCY6 615 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 SOAT1P35610 550 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 INAQ16352 499 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 KLHL12Q53G59 568 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 CLEC17AQ6ZS10 378 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 ARHGAP22Q7Z5H3 698 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 JAMLQ86YT9 394 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 PNMA3Q9UL41 463 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 ZBTB39O15060 712 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 TRIQKQ629K1 86 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 KRT77Q7Z794 578 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 C9orf72Q96LT7 481 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 ZNF560Q96MR9 790 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 AGAP3Q96P47 875 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 EFCAB1Q9HAE3 211 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 SMARCAL1Q9NZC9 954 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 PDXKO00764 312 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 KRT20P35900 424 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 SULT1E1P49888 294 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 TRMT2AQ8IZ69 625 aaKnown RBP14.46□□□□□ -0.09
CSPG4-201ENST00000308508 SPATA16Q9BXB7 569 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 CACNA2D2Q9NY47 1150 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 UTYO14607 1347 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 A8MXQ7 604 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 O00370 1275 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 KIAA0391O15091 583 aaKnown RBP14.46□□□□□ -0.09
CSPG4-201ENST00000308508 BCL10O95999 233 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 CHRNB3Q05901 458 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 RSBN1Q5VWQ0 802 aaPredicted RBP14.46□□□□□ -0.09
CSPG4-201ENST00000308508 IKBIPQ70UQ0 350 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 POLR3FQ9H1D9 316 aaPredicted RBP14.46□□□□□ -0.09
CSPG4-201ENST00000308508 AGO2Q9UKV8 859 aaKnown RBP14.46□□□□□ -0.09
CSPG4-201ENST00000308508 TBX22Q9Y458 520 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 LAMC1P11047 1609 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 S100A9P06702 114 aaKnown RBP14.46□□□□□ -0.09
CSPG4-201ENST00000308508 PGK2P07205 417 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 TPP2P29144 1249 aaPredicted RBP14.46□□□□□ -0.09
CSPG4-201ENST00000308508 OASLQ15646 514 aaKnown RBP14.46□□□□□ -0.09
CSPG4-201ENST00000308508 DAPK2Q9UIK4 370 aa14.46□□□□□ -0.09
CSPG4-201ENST00000308508 CYP26A1O43174 497 aa14.46□□□□□ -0.1
CSPG4-201ENST00000308508 P4HBP07237 508 aaKnown RBP14.46□□□□□ -0.1
CSPG4-201ENST00000308508 SEC24CP53992 1094 aa14.46□□□□□ -0.1
CSPG4-201ENST00000308508 FAM83EQ2M2I3 478 aa14.46□□□□□ -0.1
CSPG4-201ENST00000308508 PRRG3Q9BZD7 231 aa14.46□□□□□ -0.1
CSPG4-201ENST00000308508 RFX7Q2KHR2 1363 aa14.46□□□□□ -0.1
CSPG4-201ENST00000308508 H7C0S8 307 aa14.46□□□□□ -0.1
CSPG4-201ENST00000308508 CNOT3O75175 753 aaKnown RBP14.46□□□□□ -0.1
CSPG4-201ENST00000308508 PDE9AO76083 593 aa14.46□□□□□ -0.1
CSPG4-201ENST00000308508 SOX11P35716 441 aa14.46□□□□□ -0.1
CSPG4-201ENST00000308508 ATP2C1P98194 919 aaPredicted RBP14.46□□□□□ -0.1
CSPG4-201ENST00000308508 MMRN1Q13201 1228 aa14.46□□□□□ -0.1
CSPG4-201ENST00000308508 NAB2Q15742 525 aa14.46□□□□□ -0.1
CSPG4-201ENST00000308508 USP39Q53GS9 565 aaKnown RBP14.46□□□□□ -0.1
CSPG4-201ENST00000308508 PDZK1Q5T2W1 519 aa14.46□□□□□ -0.1
CSPG4-201ENST00000308508 TRIM65Q6PJ69 517 aa14.46□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms