RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 EDRF1Q3B7T1 1238 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 ZNF473Q8WTR7 871 aaKnown RBP12.01□□□□□ -0.49
USP53-201ENST00000274030 TEX12Q9BXU0 123 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 EIF2AQ9BY44 585 aaKnown RBP12.01□□□□□ -0.49
USP53-201ENST00000274030 TMEM8AQ9HCN3 771 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 AIM2O14862 343 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 KLHDC7AQ5VTJ3 777 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 GRAMD1AQ96CP6 724 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 HPDLQ96IR7 371 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 IL1RL2Q9HB29 575 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 HPS5Q9UPZ3 1129 aa12.01□□□□□ -0.49
USP53-201ENST00000274030 MED14O60244 1454 aa12□□□□□ -0.49
USP53-201ENST00000274030 OCM2P0CE71 109 aa12□□□□□ -0.49
USP53-201ENST00000274030 OCMP0CE72 109 aaPredicted RBP12□□□□□ -0.49
USP53-201ENST00000274030 PGBD3Q8N328 593 aa12□□□□□ -0.49
USP53-201ENST00000274030 C1orf131Q8NDD1 294 aaKnown RBP12□□□□□ -0.49
USP53-201ENST00000274030 SGF29Q96ES7 293 aa12□□□□□ -0.49
USP53-201ENST00000274030 KLC4Q9NSK0 619 aa12□□□□□ -0.49
USP53-201ENST00000274030 PSMC3IPQ9P2W1 217 aaPredicted RBP12□□□□□ -0.49
USP53-201ENST00000274030 PKP3Q9Y446 797 aa12□□□□□ -0.49
USP53-201ENST00000274030 PDS5AQ29RF7 1337 aaKnown RBP12□□□□□ -0.49
USP53-201ENST00000274030 ITIH6Q6UXX5 1313 aa12□□□□□ -0.49
USP53-201ENST00000274030 LAMC1P11047 1609 aa12□□□□□ -0.49
USP53-201ENST00000274030 CLTCL1P53675 1640 aa12□□□□□ -0.49
USP53-201ENST00000274030 PREX2Q70Z35 1606 aa12□□□□□ -0.49
USP53-201ENST00000274030 CCL15-CCL14A0A0B4J2E2 113 aa12□□□□□ -0.49
USP53-201ENST00000274030 LOC100653049A0A140TA62 436 aa12□□□□□ -0.49
USP53-201ENST00000274030 KRT34O76011 436 aa12□□□□□ -0.49
USP53-201ENST00000274030 MAGEA4P43358 317 aa12□□□□□ -0.49
USP53-201ENST00000274030 KCNJ6P48051 423 aa12□□□□□ -0.49
USP53-201ENST00000274030 SEC24CP53992 1094 aa12□□□□□ -0.49
USP53-201ENST00000274030 CCL15Q16663 113 aa12□□□□□ -0.49
USP53-201ENST00000274030 MROH9Q5TGP6 573 aa12□□□□□ -0.49
USP53-201ENST00000274030 ACER1Q8TDN7 264 aa12□□□□□ -0.49
USP53-201ENST00000274030 IL17RAQ96F46 866 aa12□□□□□ -0.49
USP53-201ENST00000274030 RUSC1Q9BVN2 902 aa12□□□□□ -0.49
USP53-201ENST00000274030 ZCCHC11Q5TAX3 1644 aaKnown RBP12□□□□□ -0.49
USP53-201ENST00000274030 SPDYE5A6NIY4 337 aa12□□□□□ -0.49
USP53-201ENST00000274030 TCF7P36402 384 aaPredicted RBP12□□□□□ -0.49
USP53-201ENST00000274030 PPP3CCP48454 512 aa12□□□□□ -0.49
USP53-201ENST00000274030 ZBTB17Q13105 803 aa12□□□□□ -0.49
USP53-201ENST00000274030 SPDYE7PQ495Y7 208 aa12□□□□□ -0.49
USP53-201ENST00000274030 RARS2Q5T160 578 aaKnown RBP12□□□□□ -0.49
USP53-201ENST00000274030 LAYNQ6UX15 382 aa12□□□□□ -0.49
USP53-201ENST00000274030 KIF2BQ8N4N8 673 aa12□□□□□ -0.49
USP53-201ENST00000274030 SHCBP1Q8NEM2 672 aa12□□□□□ -0.49
USP53-201ENST00000274030 SCFD1Q8WVM8 642 aa12□□□□□ -0.49
USP53-201ENST00000274030 SPON1Q9HCB6 807 aa12□□□□□ -0.49
USP53-201ENST00000274030 LSM7Q9UK45 103 aaKnown RBP12□□□□□ -0.49
USP53-201ENST00000274030 PNPLA6Q8IY17 1366 aa12□□□□□ -0.49
USP53-201ENST00000274030 PPP1R3GB7ZBB8 358 aa12□□□□□ -0.49
USP53-201ENST00000274030 MAGEB2O15479 319 aa12□□□□□ -0.49
USP53-201ENST00000274030 ALDH1A1P00352 501 aa12□□□□□ -0.49
USP53-201ENST00000274030 FBXW10Q5XX13 1052 aa12□□□□□ -0.49
USP53-201ENST00000274030 LONP2Q86WA8 852 aa12□□□□□ -0.49
USP53-201ENST00000274030 MTBPQ96DY7 904 aa12□□□□□ -0.49
USP53-201ENST00000274030 YIPF2Q9BWQ6 316 aa12□□□□□ -0.49
USP53-201ENST00000274030 THAP2Q9H0W7 228 aa12□□□□□ -0.49
USP53-201ENST00000274030 EPN3Q9H201 632 aa12□□□□□ -0.49
USP53-201ENST00000274030 V9GYQ6 96 aa12□□□□□ -0.49
USP53-201ENST00000274030 MSH4O15457 936 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 PJA2O43164 708 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 ST8SIA6P61647 398 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 HS6ST3Q8IZP7 471 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 ZC3H15Q8WU90 426 aaKnown RBP11.99□□□□□ -0.49
USP53-201ENST00000274030 ERP27Q96DN0 273 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 SHCBP1LQ9BZQ2 653 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 KDM4CQ9H3R0 1056 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 ERAP1Q9NZ08 941 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 TMEM120BA0PK00 339 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 ZNF263O14978 683 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 DPEP1P16444 411 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 STILQ15468 1287 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 MAPRE2Q15555 327 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 ANKS1AQ92625 1134 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 ZIM3Q96PE6 472 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 THTPAQ9BU02 230 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 APOL5Q9BWW9 433 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 STAU2Q9NUL3 570 aaKnown RBP eCLIP11.99□□□□□ -0.49
USP53-201ENST00000274030 TRAF3IP3Q9Y228 551 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 ARHGEF40Q8TER5 1519 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 SUPT3HB4E1H0 165 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 EXTL3O43909 919 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 SUPT3HO75486 399 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 GPD1P21695 349 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 CPA2P48052 419 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 RFX5P48382 616 aaPredicted RBP11.99□□□□□ -0.49
USP53-201ENST00000274030 ICE2Q659A1 982 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 GLB1LQ6UWU2 654 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 SYDE1Q6ZW31 735 aaPredicted RBP11.99□□□□□ -0.49
USP53-201ENST00000274030 NIF3L1Q9GZT8 377 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 ABI2Q9NYB9 513 aaPredicted RBP11.99□□□□□ -0.49
USP53-201ENST00000274030 CD274Q9NZQ7 290 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 SMG5Q9UPR3 1016 aaKnown RBP11.99□□□□□ -0.49
USP53-201ENST00000274030 FAM47DPA6NHR8 397 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 KBTBD13C9JR72 458 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 AKAP10O43572 662 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 CD4P01730 458 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 DMC1Q14565 340 aa11.99□□□□□ -0.49
USP53-201ENST00000274030 RIT2Q99578 217 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms