RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 PARP2Q9UGN5 583 aa17.62■□□□□ 0.41
VPS54-201ENST00000272322 GOLGA8RI6L899 631 aa17.62■□□□□ 0.41
VPS54-201ENST00000272322 ZNF280AP59817 542 aaPredicted RBP17.62■□□□□ 0.41
VPS54-201ENST00000272322 LACTBP83111 547 aaPredicted RBP17.62■□□□□ 0.41
VPS54-201ENST00000272322 KIF2BQ8N4N8 673 aa17.62■□□□□ 0.41
VPS54-201ENST00000272322 ATL2Q8NHH9 583 aa17.62■□□□□ 0.41
VPS54-201ENST00000272322 SPOCK2Q92563 424 aa17.62■□□□□ 0.41
VPS54-201ENST00000272322 HVCN1Q96D96 273 aa17.62■□□□□ 0.41
VPS54-201ENST00000272322 TBC1D31Q96DN5 1066 aa17.62■□□□□ 0.41
VPS54-201ENST00000272322 TIPINQ9BVW5 301 aa17.62■□□□□ 0.41
VPS54-201ENST00000272322 FAM129AQ9BZQ8 928 aa17.62■□□□□ 0.41
VPS54-201ENST00000272322 LRRC19Q9H756 370 aa17.62■□□□□ 0.41
VPS54-201ENST00000272322 ALG13Q9NP73 1137 aaKnown RBP17.62■□□□□ 0.41
VPS54-201ENST00000272322 ABCF3Q9NUQ8 709 aa17.62■□□□□ 0.41
VPS54-201ENST00000272322 SAMD15Q9P1V8 674 aa17.62■□□□□ 0.41
VPS54-201ENST00000272322 NUDT17P0C025 328 aa17.62■□□□□ 0.41
VPS54-201ENST00000272322 HADHBP55084 474 aaKnown RBP17.62■□□□□ 0.41
VPS54-201ENST00000272322 NFX1Q12986 1120 aaKnown RBP17.62■□□□□ 0.41
VPS54-201ENST00000272322 TAF5Q15542 800 aa17.62■□□□□ 0.41
VPS54-201ENST00000272322 EIF1ADQ8N9N8 165 aaKnown RBP17.62■□□□□ 0.41
VPS54-201ENST00000272322 CCDC197Q8NCU1 140 aa17.62■□□□□ 0.41
VPS54-201ENST00000272322 CDHR1Q96JP9 859 aa17.62■□□□□ 0.41
VPS54-201ENST00000272322 NINJ2Q9NZG7 142 aa17.62■□□□□ 0.41
VPS54-201ENST00000272322 F5H423 210 aaPredicted RBP17.61■□□□□ 0.41
VPS54-201ENST00000272322 DKC1O60832 514 aaKnown RBP eCLIP17.61■□□□□ 0.41
VPS54-201ENST00000272322 CXCL8P10145 99 aa17.61■□□□□ 0.41
VPS54-201ENST00000272322 ALDH5A1P51649 535 aaPredicted RBP17.61■□□□□ 0.41
VPS54-201ENST00000272322 GTF2A1P52655 376 aaPredicted RBP17.61■□□□□ 0.41
VPS54-201ENST00000272322 FEZF2Q8TBJ5 459 aa17.61■□□□□ 0.41
VPS54-201ENST00000272322 HSPH1Q92598 858 aa17.61■□□□□ 0.41
VPS54-201ENST00000272322 A0A0B4J269 797 aa17.61■□□□□ 0.41
VPS54-201ENST00000272322 SOWAHBA6NEL2 793 aa17.61■□□□□ 0.41
VPS54-201ENST00000272322 TMEM62Q0P6H9 643 aa17.61■□□□□ 0.41
VPS54-201ENST00000272322 ZNF568Q3ZCX4 644 aa17.61■□□□□ 0.41
VPS54-201ENST00000272322 HIBCHQ6NVY1 386 aaPredicted RBP17.61■□□□□ 0.41
VPS54-201ENST00000272322 SLC17A8Q8NDX2 589 aa17.61■□□□□ 0.41
VPS54-201ENST00000272322 UBA3Q8TBC4 463 aa17.61■□□□□ 0.41
VPS54-201ENST00000272322 DHX33Q9H6R0 707 aaKnown RBP17.61■□□□□ 0.41
VPS54-201ENST00000272322 CD48P09326 243 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 KRT15P19012 456 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 FNTAP49354 379 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 RAB6CQ53S08 254 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 ZBED8Q8IZ13 594 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 RAB6CQ9H0N0 254 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 NRBP2Q9NSY0 501 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 MAFGO15525 162 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 FARP2O94887 1054 aaPredicted RBP17.6■□□□□ 0.41
VPS54-201ENST00000272322 RFC1P35251 1148 aaPredicted RBP17.6■□□□□ 0.41
VPS54-201ENST00000272322 MMP13P45452 471 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 CENPCQ03188 943 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 ZNF699Q32M78 642 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 Q3C1V9 767 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 ERICH1Q86X53 443 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 ATXN2LQ8WWM7 1075 aaKnown RBP17.6■□□□□ 0.41
VPS54-201ENST00000272322 LBHD1Q9BQE6 289 aaPredicted RBP17.6■□□□□ 0.41
VPS54-201ENST00000272322 CALN1Q9BXU9 219 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 MINDY3Q9H8M7 445 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 C17orf75Q9HAS0 396 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 NAALADL1Q9UQQ1 740 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 TTC4O95801 387 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 IVDP26440 423 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 STX2P32856 288 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 DRG2P55039 364 aaKnown RBP17.6■□□□□ 0.41
VPS54-201ENST00000272322 BPIFB4P59827 614 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 LAMTOR4Q0VGL1 99 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 C15orf39Q6ZRI6 1047 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 JOSD2Q8TAC2 188 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 VTI1AQ96AJ9 217 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 CPB2Q96IY4 423 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 ZNF408Q9H9D4 720 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 SLC40A1Q9NP59 571 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 BAIAP2L1Q9UHR4 511 aa17.6■□□□□ 0.41
VPS54-201ENST00000272322 COL2A1P02458 1487 aaPredicted RBP17.6■□□□□ 0.41
VPS54-201ENST00000272322 RASA4BC9J798 803 aa17.59■□□□□ 0.41
VPS54-201ENST00000272322 MAPK13O15264 365 aa17.59■□□□□ 0.41
VPS54-201ENST00000272322 RASA4O43374 803 aa17.59■□□□□ 0.41
VPS54-201ENST00000272322 PRKCBP05771 671 aa17.59■□□□□ 0.41
VPS54-201ENST00000272322 NAMPTP43490 491 aa17.59■□□□□ 0.41
VPS54-201ENST00000272322 GCLCP48506 637 aaPredicted RBP17.59■□□□□ 0.41
VPS54-201ENST00000272322 MRPL47Q9HD33 250 aaKnown RBP17.59■□□□□ 0.41
VPS54-201ENST00000272322 HMGXB4Q9UGU5 601 aa17.59■□□□□ 0.41
VPS54-201ENST00000272322 STK38LQ9Y2H1 464 aa17.59■□□□□ 0.41
VPS54-201ENST00000272322 SCTRP47872 440 aa17.59■□□□□ 0.41
VPS54-201ENST00000272322 CNGA2Q16280 664 aa17.59■□□□□ 0.41
VPS54-201ENST00000272322 MAPK6Q16659 721 aa17.59■□□□□ 0.41
VPS54-201ENST00000272322 DENND1BQ6P3S1 775 aa17.59■□□□□ 0.41
VPS54-201ENST00000272322 ZC3H18Q86VM9 953 aaKnown RBP17.59■□□□□ 0.41
VPS54-201ENST00000272322 SPATA33Q96N06 139 aa17.59■□□□□ 0.41
VPS54-201ENST00000272322 SENP7Q9BQF6 1050 aa17.59■□□□□ 0.41
VPS54-201ENST00000272322 MTA2O94776 668 aa17.59■□□□□ 0.41
VPS54-201ENST00000272322 CYP1A1P04798 512 aaPredicted RBP17.59■□□□□ 0.41
VPS54-201ENST00000272322 PSMA2P25787 234 aa17.59■□□□□ 0.41
VPS54-201ENST00000272322 PGM2Q96G03 612 aa17.59■□□□□ 0.41
VPS54-201ENST00000272322 TXNRD2Q9NNW7 524 aa17.59■□□□□ 0.41
VPS54-201ENST00000272322 SLTMQ9NWH9 1034 aaKnown RBP eCLIP17.59■□□□□ 0.41
VPS54-201ENST00000272322 TRIM33Q9UPN9 1127 aa17.59■□□□□ 0.41
VPS54-201ENST00000272322 NEU2Q9Y3R4 380 aa17.59■□□□□ 0.41
VPS54-201ENST00000272322 MAFBQ9Y5Q3 323 aaPredicted RBP17.59■□□□□ 0.41
VPS54-201ENST00000272322 CNTNAP2Q9UHC6 1331 aa17.58■□□□□ 0.41
VPS54-201ENST00000272322 EXOC1LA0A1B0GW35 172 aa17.58■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms