RNA–Protein interactions for RNA: ENST00000268049.11

USP3-201, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-201ENST00000268049 SELENONQ9NZV5 590 aa8.22□□□□□ -1.09
USP3-201ENST00000268049 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.22□□□□□ -1.09
USP3-201ENST00000268049 HSFX4A0A1B0GTS1 333 aaPredicted RBP8.22□□□□□ -1.09
USP3-201ENST00000268049 HSFX3A0A1B0GWH4 333 aaPredicted RBP8.22□□□□□ -1.09
USP3-201ENST00000268049 GOLGA8SH3BPF8 625 aa8.22□□□□□ -1.09
USP3-201ENST00000268049 DAB1O75553 588 aa8.22□□□□□ -1.09
USP3-201ENST00000268049 PLA2G4BP0C869 781 aa8.22□□□□□ -1.09
USP3-201ENST00000268049 RTP1P59025 263 aa8.22□□□□□ -1.09
USP3-201ENST00000268049 TMEM62Q0P6H9 643 aa8.22□□□□□ -1.09
USP3-201ENST00000268049 ZNF177Q13360 481 aaPredicted RBP8.22□□□□□ -1.09
USP3-201ENST00000268049 TMTC4Q5T4D3 741 aa8.22□□□□□ -1.09
USP3-201ENST00000268049 ALKBH8Q96BT7 664 aaKnown RBP8.22□□□□□ -1.09
USP3-201ENST00000268049 TCF25Q9BQ70 676 aa8.22□□□□□ -1.09
USP3-201ENST00000268049 NDEL1Q9GZM8 345 aa8.22□□□□□ -1.09
USP3-201ENST00000268049 AASDHPPTQ9NRN7 309 aa8.22□□□□□ -1.09
USP3-201ENST00000268049 TYW1Q9NV66 732 aaKnown RBP8.22□□□□□ -1.09
USP3-201ENST00000268049 CLDND1Q9NY35 253 aa8.22□□□□□ -1.09
USP3-201ENST00000268049 SPG21Q9NZD8 308 aa8.22□□□□□ -1.09
USP3-201ENST00000268049 PRR23AA6NEV1 266 aa8.21□□□□□ -1.09
USP3-201ENST00000268049 E9PMD0 336 aa8.21□□□□□ -1.09
USP3-201ENST00000268049 H3BRJ5 948 aa8.21□□□□□ -1.09
USP3-201ENST00000268049 ZNF263O14978 683 aa8.21□□□□□ -1.09
USP3-201ENST00000268049 TPD52L2O43399 206 aaKnown RBP8.21□□□□□ -1.09
USP3-201ENST00000268049 VCAM1P19320 739 aa8.21□□□□□ -1.09
USP3-201ENST00000268049 GARTP22102 1010 aa8.21□□□□□ -1.09
USP3-201ENST00000268049 DDIT3P35638 169 aa8.21□□□□□ -1.09
USP3-201ENST00000268049 RAP1GDS1P52306 607 aa8.21□□□□□ -1.09
USP3-201ENST00000268049 CDR2Q01850 454 aa8.21□□□□□ -1.09
USP3-201ENST00000268049 CYLC2Q14093 348 aaPredicted RBP8.21□□□□□ -1.09
USP3-201ENST00000268049 UBXN2BQ14CS0 331 aa8.21□□□□□ -1.09
USP3-201ENST00000268049 DCAF6Q58WW2 860 aa8.21□□□□□ -1.09
USP3-201ENST00000268049 TMEM164Q5U3C3 297 aa8.21□□□□□ -1.09
USP3-201ENST00000268049 ADGRA1Q86SQ6 560 aa8.21□□□□□ -1.09
USP3-201ENST00000268049 KSR1Q8IVT5 923 aa8.21□□□□□ -1.09
USP3-201ENST00000268049 FBXO16Q8IX29 292 aaPredicted RBP8.21□□□□□ -1.09
USP3-201ENST00000268049 MTMR14Q8NCE2 650 aa8.21□□□□□ -1.09
USP3-201ENST00000268049 TMEM35BQ8NCS4 154 aa8.21□□□□□ -1.09
USP3-201ENST00000268049 SPATA18Q8TC71 538 aa8.21□□□□□ -1.09
USP3-201ENST00000268049 NELFBQ8WX92 580 aa8.21□□□□□ -1.09
USP3-201ENST00000268049 CGRRF1Q99675 332 aa8.21□□□□□ -1.09
USP3-201ENST00000268049 EPB41L5Q9HCM4 733 aa8.21□□□□□ -1.09
USP3-201ENST00000268049 UBAP1Q9NZ09 502 aa8.21□□□□□ -1.09
USP3-201ENST00000268049 NOVA2Q9UNW9 492 aaKnown RBP8.21□□□□□ -1.09
USP3-201ENST00000268049 TRAV19A0A0A6YYK7 116 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 MYO1FO00160 1098 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 KRT14P02533 472 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 KRT8P05787 483 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 TRPC1P48995 793 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 BASP1P80723 227 aaKnown RBP8.21□□□□□ -1.1
USP3-201ENST00000268049 GPM6BQ13491 265 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 PPP4R4Q6NUP7 873 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 ERAP2Q6P179 960 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 ILDR2Q71H61 639 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 SLC7A14Q8TBB6 771 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 CASP10Q92851 521 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 KRT12Q99456 494 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 KIFC3Q9BVG8 833 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 DDX4Q9NQI0 724 aaKnown RBP8.21□□□□□ -1.1
USP3-201ENST00000268049 TBC1D23Q9NUY8 699 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 BZW2Q9Y6E2 419 aaKnown RBP8.21□□□□□ -1.1
USP3-201ENST00000268049 FAM47DPA6NHR8 397 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 YDJCA8MPS7 323 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 PDE2AO00408 941 aaPredicted RBP8.21□□□□□ -1.1
USP3-201ENST00000268049 MAPK13O15264 365 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 MYO1DO94832 1006 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 PCDH8O95206 1070 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 APODP05090 189 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 ESRRAP11474 423 aaPredicted RBP8.21□□□□□ -1.1
USP3-201ENST00000268049 KLC1Q07866 573 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 EMC2Q15006 297 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 NXNQ6DKJ4 435 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 SNRNP27Q8WVK2 155 aaKnown RBP8.21□□□□□ -1.1
USP3-201ENST00000268049 FBXO32Q969P5 355 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 ELAC2Q9BQ52 826 aaKnown RBP8.21□□□□□ -1.1
USP3-201ENST00000268049 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.21□□□□□ -1.13e-7■□□□□ 11.3
USP3-201ENST00000268049 ZDHHC4Q9NPG8 344 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 FBXO28Q9NVF7 368 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 FZD1Q9UP38 647 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 PCDHB5Q9Y5E4 795 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 USP28Q96RU2 1077 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 CIPCQ9C0C6 399 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 RMI1Q9H9A7 625 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 MAPK8IP1Q9UQF2 711 aa8.21□□□□□ -1.1
USP3-201ENST00000268049 STK36Q9NRP7 1315 aa8.2□□□□□ -1.1
USP3-201ENST00000268049 A0A087WZ62 844 aa8.2□□□□□ -1.1
USP3-201ENST00000268049 MEFVO15553 781 aaPredicted RBP8.2□□□□□ -1.1
USP3-201ENST00000268049 CXCL14O95715 111 aa8.2□□□□□ -1.1
USP3-201ENST00000268049 CHEK2O96017 543 aa8.2□□□□□ -1.1
USP3-201ENST00000268049 TPP2P29144 1249 aaPredicted RBP8.2□□□□□ -1.1
USP3-201ENST00000268049 SDC4P31431 198 aa8.2□□□□□ -1.1
USP3-201ENST00000268049 AKT1P31749 480 aa8.2□□□□□ -1.1
USP3-201ENST00000268049 TSGA10IPQ3SY00 556 aa8.2□□□□□ -1.1
USP3-201ENST00000268049 FNDC3BQ53EP0 1204 aaKnown RBP8.2□□□□□ -1.1
USP3-201ENST00000268049 KLC3Q6P597 504 aa8.2□□□□□ -1.1
USP3-201ENST00000268049 EMBQ6PCB8 327 aa8.2□□□□□ -1.1
USP3-201ENST00000268049 FAM43BQ6ZT52 329 aaPredicted RBP8.2□□□□□ -1.1
USP3-201ENST00000268049 AGBL1Q96MI9 1066 aa8.2□□□□□ -1.1
USP3-201ENST00000268049 AIFM3Q96NN9 605 aa8.2□□□□□ -1.1
USP3-201ENST00000268049 SRRDQ9UH36 339 aa8.2□□□□□ -1.1
USP3-201ENST00000268049 TLL2Q9Y6L7 1015 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms