RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 ASAP2O43150 1006 aa17.24■□□□□ 0.35
CTCF-201ENST00000264010 CHRNB2P17787 502 aa17.24■□□□□ 0.35
CTCF-201ENST00000264010 GPR88Q9GZN0 384 aa17.24■□□□□ 0.35
CTCF-201ENST00000264010 DNAJC17Q9NVM6 304 aaKnown RBP17.24■□□□□ 0.35
CTCF-201ENST00000264010 IKBKGQ9Y6K9 419 aa17.24■□□□□ 0.35
CTCF-201ENST00000264010 HBP1O60381 514 aa17.24■□□□□ 0.35
CTCF-201ENST00000264010 FGFR4P22455 802 aa17.24■□□□□ 0.35
CTCF-201ENST00000264010 ICAM3P32942 547 aa17.24■□□□□ 0.35
CTCF-201ENST00000264010 ATF7IP2Q5U623 682 aa17.24■□□□□ 0.35
CTCF-201ENST00000264010 WDR49Q8IV35 697 aa17.24■□□□□ 0.35
CTCF-201ENST00000264010 RSAD2Q8WXG1 361 aa17.24■□□□□ 0.35
CTCF-201ENST00000264010 DDX27Q96GQ7 796 aaKnown RBP17.24■□□□□ 0.35
CTCF-201ENST00000264010 PPP1R16BQ96T49 567 aa17.24■□□□□ 0.35
CTCF-201ENST00000264010 H0Y3Z8 333 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 PGK2P07205 417 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 RARAP10276 462 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 PSMA2P25787 234 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 LY6KQ17RY6 165 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 TRMT10CQ7L0Y3 403 aaKnown RBP17.23■□□□□ 0.35
CTCF-201ENST00000264010 FBXL18Q96ME1 805 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 VPS37BQ9H9H4 285 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 ATP2A2P16615 1042 aaKnown RBP17.23■□□□□ 0.35
CTCF-201ENST00000264010 ZNF844Q08AG5 666 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 TDRD10Q5VZ19 366 aaKnown RBP17.23■□□□□ 0.35
CTCF-201ENST00000264010 DPY19L2P1Q6NXN4 242 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 LBX2Q6XYB7 198 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 DPP9Q86TI2 863 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 BRSK2Q8IWQ3 736 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 PRELID2Q8N945 189 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 ANKRD42Q8N9B4 389 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 NLRP7Q8WX94 980 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 NRXN2Q9P2S2 1712 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 LTBP3Q9NS15 1303 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 CXCL11O14625 94 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 PSTPIP1O43586 416 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 DRG2P55039 364 aaKnown RBP17.23■□□□□ 0.35
CTCF-201ENST00000264010 CENPCQ03188 943 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 ZBTB16Q05516 673 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 DUPD1Q68J44 220 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 RCOR2Q8IZ40 523 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 VCPIP1Q96JH7 1222 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 MTMR12Q9C0I1 747 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 VCXQ9H320 206 aa17.23■□□□□ 0.35
CTCF-201ENST00000264010 SGK1O00141 431 aa17.22■□□□□ 0.35
CTCF-201ENST00000264010 DDNO94850 711 aaPredicted RBP17.22■□□□□ 0.35
CTCF-201ENST00000264010 LAMTOR4Q0VGL1 99 aa17.22■□□□□ 0.35
CTCF-201ENST00000264010 SLC29A2Q14542 456 aa17.22■□□□□ 0.35
CTCF-201ENST00000264010 TSNAXIP1Q2TAA8 658 aa17.22■□□□□ 0.35
CTCF-201ENST00000264010 NOL9Q5SY16 702 aaKnown RBP17.22■□□□□ 0.35
CTCF-201ENST00000264010 PPFIBP2Q8ND30 876 aa17.22■□□□□ 0.35
CTCF-201ENST00000264010 DHX33Q9H6R0 707 aaKnown RBP17.22■□□□□ 0.35
CTCF-201ENST00000264010 GTF3C5Q9Y5Q8 519 aaPredicted RBP17.22■□□□□ 0.35
CTCF-201ENST00000264010 TXNDC9O14530 226 aa17.22■□□□□ 0.35
CTCF-201ENST00000264010 MTA2O94776 668 aa17.22■□□□□ 0.35
CTCF-201ENST00000264010 CALCAP01258 141 aa17.22■□□□□ 0.35
CTCF-201ENST00000264010 RALAP11233 206 aa17.22■□□□□ 0.35
CTCF-201ENST00000264010 C1QBPQ07021 282 aaKnown RBP17.22■□□□□ 0.35
CTCF-201ENST00000264010 PTGISQ16647 500 aa17.22■□□□□ 0.35
CTCF-201ENST00000264010 MFSD4BQ5TF39 518 aa17.22■□□□□ 0.35
CTCF-201ENST00000264010 EFCAB12Q6NXP0 572 aa17.22■□□□□ 0.35
CTCF-201ENST00000264010 CCT8L2Q96SF2 557 aa17.22■□□□□ 0.35
CTCF-201ENST00000264010 PCYOX1Q9UHG3 505 aa17.22■□□□□ 0.35
CTCF-201ENST00000264010 PGAP2Q9UHJ9 254 aa17.22■□□□□ 0.35
CTCF-201ENST00000264010 MAFBQ9Y5Q3 323 aaPredicted RBP17.22■□□□□ 0.35
CTCF-201ENST00000264010 SPDYCQ5MJ68 293 aa17.22■□□□□ 0.35
CTCF-201ENST00000264010 FAM84AQ96KN4 292 aa17.22■□□□□ 0.35
CTCF-201ENST00000264010 ASCC2Q9H1I8 757 aaPredicted RBP17.22■□□□□ 0.35
CTCF-201ENST00000264010 DDX56Q9NY93 547 aaKnown RBP17.22■□□□□ 0.35
CTCF-201ENST00000264010 AGTP01019 485 aa17.21■□□□□ 0.35
CTCF-201ENST00000264010 WEE2P0C1S8 567 aa17.21■□□□□ 0.35
CTCF-201ENST00000264010 CYP4F22Q6NT55 531 aa17.21■□□□□ 0.35
CTCF-201ENST00000264010 CCDC13Q8IYE1 715 aa17.21■□□□□ 0.35
CTCF-201ENST00000264010 TRAIPQ9BWF2 469 aa17.21■□□□□ 0.35
CTCF-201ENST00000264010 IL18RAPO95256 599 aa17.21■□□□□ 0.35
CTCF-201ENST00000264010 RPL21P46778 160 aaKnown RBP17.21■□□□□ 0.35
CTCF-201ENST00000264010 CAPSQ13938 189 aa17.21■□□□□ 0.35
CTCF-201ENST00000264010 C1orf220Q5T0J3 134 aa17.21■□□□□ 0.35
CTCF-201ENST00000264010 TREML2Q5T2D2 321 aa17.21■□□□□ 0.35
CTCF-201ENST00000264010 GPAT2Q6NUI2 795 aa17.21■□□□□ 0.35
CTCF-201ENST00000264010 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.21■□□□□ 0.35
CTCF-201ENST00000264010 HEXIM2Q96MH2 286 aaKnown RBP17.21■□□□□ 0.35
CTCF-201ENST00000264010 NIFKQ9BYG3 293 aaKnown RBP17.21■□□□□ 0.35
CTCF-201ENST00000264010 HAUS2Q9NVX0 235 aa17.21■□□□□ 0.35
CTCF-201ENST00000264010 ADM5C9JUS6 153 aa17.21■□□□□ 0.35
CTCF-201ENST00000264010 PI4K2BG5E9Z4 385 aa17.21■□□□□ 0.35
CTCF-201ENST00000264010 RARGP13631 454 aa17.21■□□□□ 0.35
CTCF-201ENST00000264010 SLC26A2P50443 739 aa17.21■□□□□ 0.35
CTCF-201ENST00000264010 PSMC1P62191 440 aaKnown RBP17.21■□□□□ 0.35
CTCF-201ENST00000264010 WDR72Q3MJ13 1102 aa17.21■□□□□ 0.35
CTCF-201ENST00000264010 MPZL3Q6UWV2 235 aa17.21■□□□□ 0.35
CTCF-201ENST00000264010 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.21■□□□□ 0.35
CTCF-201ENST00000264010 P3H4Q92791 437 aa17.21■□□□□ 0.35
CTCF-201ENST00000264010 MRRFQ96E11 262 aaKnown RBP17.21■□□□□ 0.35
CTCF-201ENST00000264010 PRMT7Q9NVM4 692 aaPredicted RBP17.21■□□□□ 0.35
CTCF-201ENST00000264010 ERAP1Q9NZ08 941 aa17.21■□□□□ 0.35
CTCF-201ENST00000264010 A0A0B4J269 797 aa17.2■□□□□ 0.34
CTCF-201ENST00000264010 MAFO75444 373 aaPredicted RBP17.2■□□□□ 0.34
CTCF-201ENST00000264010 USP2O75604 605 aaPredicted RBP17.2■□□□□ 0.34
CTCF-201ENST00000264010 KRT15P19012 456 aa17.2■□□□□ 0.34
CTCF-201ENST00000264010 MYL6P60660 151 aa17.2■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 37.4 ms