RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 PTPAQ15257 358 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 ATF7IP2Q5U623 682 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 RGS9BPQ6ZS82 235 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 FBXO33Q7Z6M2 555 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 CPA5Q8WXQ8 436 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 KCNB2Q92953 911 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 CMTM5Q96DZ9 223 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 OLFM3Q96PB7 478 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 SLITRK1Q96PX8 696 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 KRT8P05787 483 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 SMAD1Q15797 465 aaKnown RBP20.04■□□□□ 0.8
UPF1-201ENST00000262803 SNRNP35Q16560 246 aaKnown RBP20.04■□□□□ 0.8
UPF1-201ENST00000262803 PRR5LQ6MZQ0 368 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 PKN3Q6P5Z2 889 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 SLC7A14Q8TBB6 771 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 ERGIC2Q96RQ1 377 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 TRPC7Q9HCX4 862 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 ADA2Q9NZK5 511 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 NCOA3Q9Y6Q9 1424 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 CHN1P15882 459 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 ACOT2P49753 483 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 CENPCQ03188 943 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 TROAPQ12815 778 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 ZC2HC1CQ53FD0 456 aaPredicted RBP20.04■□□□□ 0.8
UPF1-201ENST00000262803 RIBC1Q8N443 379 aaPredicted RBP20.04■□□□□ 0.8
UPF1-201ENST00000262803 PAWRQ96IZ0 340 aaKnown RBP20.04■□□□□ 0.8
UPF1-201ENST00000262803 RBM15Q96T37 977 aaKnown RBP eCLIP20.04■□□□□ 0.82e-7■■■■□ 21.3
UPF1-201ENST00000262803 RUBCNLQ9H714 662 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 DOLKQ9UPQ8 538 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 ARL2BPQ9Y2Y0 163 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 CEMIPQ8WUJ3 1361 aa20.04■□□□□ 0.8
UPF1-201ENST00000262803 NEXMIFQ5QGS0 1516 aa20.03■□□□□ 0.8
UPF1-201ENST00000262803 SPDYE5A6NIY4 337 aa20.03■□□□□ 0.8
UPF1-201ENST00000262803 NTSR2O95665 410 aa20.03■□□□□ 0.8
UPF1-201ENST00000262803 KLRC1P26715 233 aa20.03■□□□□ 0.8
UPF1-201ENST00000262803 SPDYE7PQ495Y7 208 aa20.03■□□□□ 0.8
UPF1-201ENST00000262803 LINC00523Q86TU6 105 aa20.03■□□□□ 0.8
UPF1-201ENST00000262803 NR1H4Q96RI1 486 aaPredicted RBP20.03■□□□□ 0.8
UPF1-201ENST00000262803 DPP7Q9UHL4 492 aa20.03■□□□□ 0.8
UPF1-201ENST00000262803 LMTK2Q8IWU2 1503 aa20.03■□□□□ 0.8
UPF1-201ENST00000262803 RGS2P41220 211 aa20.03■□□□□ 0.8
UPF1-201ENST00000262803 CARSP49589 748 aaKnown RBP20.03■□□□□ 0.8
UPF1-201ENST00000262803 HARS2P49590 506 aaKnown RBP20.03■□□□□ 0.8
UPF1-201ENST00000262803 FXR2P51116 673 aaKnown RBP eCLIP20.03■□□□□ 0.85e-7■■■■□ 22
UPF1-201ENST00000262803 SETD3Q86TU7 594 aaPredicted RBP20.03■□□□□ 0.8
UPF1-201ENST00000262803 RBBP8NLQ8NC74 664 aaPredicted RBP20.03■□□□□ 0.8
UPF1-201ENST00000262803 OR2W6PQ8NHA6 318 aa20.03■□□□□ 0.8
UPF1-201ENST00000262803 PRR12Q9ULL5 1215 aa20.03■□□□□ 0.8
UPF1-201ENST00000262803 PCDHB2Q9Y5E7 798 aa20.03■□□□□ 0.8
UPF1-201ENST00000262803 CD163L1Q9NR16 1453 aa20.03■□□□□ 0.8
UPF1-201ENST00000262803 ALDH1A3P47895 512 aa20.03■□□□□ 0.8
UPF1-201ENST00000262803 UGT3A1Q6NUS8 523 aa20.03■□□□□ 0.8
UPF1-201ENST00000262803 REXO1L1PQ8IX06 675 aa20.03■□□□□ 0.8
UPF1-201ENST00000262803 C9orf72Q96LT7 481 aa20.03■□□□□ 0.8
UPF1-201ENST00000262803 ALG13Q9NP73 1137 aaKnown RBP20.03■□□□□ 0.8
UPF1-201ENST00000262803 WARS2Q9UGM6 360 aaKnown RBP20.03■□□□□ 0.8
UPF1-201ENST00000262803 TMEM132BQ14DG7 1078 aa20.03■□□□□ 0.8
UPF1-201ENST00000262803 ANKS1AQ92625 1134 aa20.03■□□□□ 0.8
UPF1-201ENST00000262803 JMJD4Q9H9V9 463 aa20.03■□□□□ 0.8
UPF1-201ENST00000262803 AFF4Q9UHB7 1163 aaKnown RBP20.03■□□□□ 0.8
UPF1-201ENST00000262803 KIAA1257Q9ULG3 409 aa20.03■□□□□ 0.8
UPF1-201ENST00000262803 UBQLN1Q9UMX0 589 aaKnown RBP20.03■□□□□ 0.8
UPF1-201ENST00000262803 PPP2R3BQ9Y5P8 575 aa20.03■□□□□ 0.8
UPF1-201ENST00000262803 GARTP22102 1010 aa20.02■□□□□ 0.8
UPF1-201ENST00000262803 SPRP35270 261 aaPredicted RBP20.02■□□□□ 0.8
UPF1-201ENST00000262803 ATP6V0D2Q8N8Y2 350 aa20.02■□□□□ 0.8
UPF1-201ENST00000262803 CYP4F11Q9HBI6 524 aa20.02■□□□□ 0.8
UPF1-201ENST00000262803 GGT7Q9UJ14 662 aa20.02■□□□□ 0.8
UPF1-201ENST00000262803 GTPBP10A4D1E9 387 aaKnown RBP20.02■□□□□ 0.8
UPF1-201ENST00000262803 KCNN4O15554 427 aa20.02■□□□□ 0.8
UPF1-201ENST00000262803 KPNA6O60684 536 aa20.02■□□□□ 0.8
UPF1-201ENST00000262803 SYF2O95926 243 aaKnown RBP20.02■□□□□ 0.8
UPF1-201ENST00000262803 CYP2C9P11712 490 aa20.02■□□□□ 0.8
UPF1-201ENST00000262803 RAD23BP54727 409 aa20.02■□□□□ 0.8
UPF1-201ENST00000262803 ARMC6Q6NXE6 501 aa20.02■□□□□ 0.8
UPF1-201ENST00000262803 CDC42EP5Q6NZY7 148 aa20.02■□□□□ 0.8
UPF1-201ENST00000262803 FAM167BQ9BTA0 163 aa20.02■□□□□ 0.8
UPF1-201ENST00000262803 NIF3L1Q9GZT8 377 aa20.02■□□□□ 0.8
UPF1-201ENST00000262803 C1orf167Q5SNV9 1468 aa20.02■□□□□ 0.8
UPF1-201ENST00000262803 ODC1P11926 461 aa20.02■□□□□ 0.8
UPF1-201ENST00000262803 RPA1P27694 616 aa20.02■□□□□ 0.8
UPF1-201ENST00000262803 LONRF1Q17RB8 773 aa20.02■□□□□ 0.8
UPF1-201ENST00000262803 JAMLQ86YT9 394 aa20.02■□□□□ 0.8
UPF1-201ENST00000262803 TAGAPQ8N103 731 aa20.02■□□□□ 0.8
UPF1-201ENST00000262803 TMEM117Q9H0C3 514 aa20.02■□□□□ 0.8
UPF1-201ENST00000262803 VPS33BQ9H267 617 aa20.02■□□□□ 0.8
UPF1-201ENST00000262803 CLCA2Q9UQC9 943 aa20.02■□□□□ 0.8
UPF1-201ENST00000262803 PCDHB7Q9Y5E2 793 aa20.02■□□□□ 0.8
UPF1-201ENST00000262803 TMEM253P0C7T8 217 aa20.02■□□□□ 0.79
UPF1-201ENST00000262803 AKT1P31749 480 aa20.02■□□□□ 0.79
UPF1-201ENST00000262803 ZNF484Q5JVG2 852 aa20.02■□□□□ 0.79
UPF1-201ENST00000262803 MMGT1Q8N4V1 131 aa20.02■□□□□ 0.79
UPF1-201ENST00000262803 SYN2Q92777 582 aaPredicted RBP20.02■□□□□ 0.79
UPF1-201ENST00000262803 TFR2Q9UP52 801 aa20.02■□□□□ 0.79
UPF1-201ENST00000262803 GOLGA8RI6L899 631 aa20.01■□□□□ 0.79
UPF1-201ENST00000262803 PRKCEQ02156 737 aa20.01■□□□□ 0.79
UPF1-201ENST00000262803 UCMAQ8WVF2 138 aa20.01■□□□□ 0.79
UPF1-201ENST00000262803 ABTB1Q969K4 478 aaPredicted RBP20.01■□□□□ 0.79
UPF1-201ENST00000262803 ZNF512Q96ME7 567 aaPredicted RBP20.01■□□□□ 0.79
UPF1-201ENST00000262803 ADAM33Q9BZ11 813 aa20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms