RNA–Protein interactions for RNA: YBR221C

PDB1, Transcript of E1 beta subunit of the pyruvate dehydrogenase (PDH) complex, yeast

Gene PDB1, Length 1,101 nt, Biotype protein coding, Subcellular localisation Mitochondria .

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
PDB1	YBR221C	GMC1	Q04399	608 aa		4.81	□□□□□ -1.64
PDB1	YBR221C	DIC1	Q06143	298 aa		4.81	□□□□□ -1.64
PDB1	YBR221C	YDL218W	Q07629	317 aa		4.81	□□□□□ -1.64
PDB1	YBR221C	IPP1	P00817	287 aa	Known RBP	4.8	□□□□□ -1.64
PDB1	YBR221C	PHO2	P07269	559 aa		4.8	□□□□□ -1.64
PDB1	YBR221C	UBI4	P0CG63	381 aa	Known RBP	4.8	□□□□□ -1.64
PDB1	YBR221C	RPL2A	P0CX45	254 aa	Known RBP	4.8	□□□□□ -1.64
PDB1	YBR221C	RPL2B	P0CX46	254 aa	Known RBP	4.8	□□□□□ -1.64
PDB1	YBR221C	MSI1	P13712	422 aa		4.8	□□□□□ -1.64
PDB1	YBR221C	MAK32	P23060	363 aa		4.8	□□□□□ -1.64
PDB1	YBR221C	TIP1	P27654	210 aa	Predicted RBP	4.8	□□□□□ -1.64
PDB1	YBR221C	PMU1	P36069	295 aa		4.8	□□□□□ -1.64
PDB1	YBR221C	YPT31	P38555	223 aa	Known RBP	4.8	□□□□□ -1.64
PDB1	YBR221C	XBP1	P40489	647 aa		4.8	□□□□□ -1.64
PDB1	YBR221C	MIC19	P43594	170 aa		4.8	□□□□□ -1.64
PDB1	YBR221C	MNN5	P46982	586 aa		4.8	□□□□□ -1.64
PDB1	YBR221C	YAE1	P47118	141 aa	Predicted RBP	4.8	□□□□□ -1.64
PDB1	YBR221C	BUL1	P48524	976 aa		4.8	□□□□□ -1.64
PDB1	YBR221C	SDT1	P53078	280 aa		4.8	□□□□□ -1.64
PDB1	YBR221C	LSM7	P53905	115 aa	Known RBP	4.8	□□□□□ -1.64
PDB1	YBR221C	PET191	Q02772	108 aa		4.8	□□□□□ -1.64
PDB1	YBR221C	TMA23	Q03525	211 aa		4.8	□□□□□ -1.64
PDB1	YBR221C	ERP1	Q05359	219 aa	Known RBP	4.8	□□□□□ -1.64
PDB1	YBR221C	YLR224W	Q05947	369 aa		4.8	□□□□□ -1.64
PDB1	YBR221C	YAP7	Q08182	245 aa		4.8	□□□□□ -1.64
PDB1	YBR221C	TIM18	Q08749	192 aa		4.8	□□□□□ -1.64
PDB1	YBR221C	YLR099W-A	Q3E798	87 aa		4.8	□□□□□ -1.64
PDB1	YBR221C	UTP20	P35194	2493 aa	Known RBP	4.8	□□□□□ -1.64
PDB1	YBR221C	SEC4	P07560	215 aa	Known RBP	4.79	□□□□□ -1.64
PDB1	YBR221C	PHO85	P17157	305 aa		4.79	□□□□□ -1.64
PDB1	YBR221C	PCL1	P24867	279 aa		4.79	□□□□□ -1.64
PDB1	YBR221C	ILV6	P25605	309 aa	Known RBP	4.79	□□□□□ -1.64
PDB1	YBR221C	ARN2	P38724	620 aa		4.79	□□□□□ -1.64
PDB1	YBR221C	AIM18	P38884	321 aa		4.79	□□□□□ -1.64
PDB1	YBR221C	ERV46	P39727	415 aa		4.79	□□□□□ -1.64
PDB1	YBR221C	OST2	P46964	130 aa		4.79	□□□□□ -1.64
PDB1	YBR221C	SLM2	P53955	656 aa		4.79	□□□□□ -1.64
PDB1	YBR221C	FSF1	Q12029	327 aa	Known RBP	4.79	□□□□□ -1.64
PDB1	YBR221C	YGK3	Q12222	375 aa	Predicted RBP	4.79	□□□□□ -1.64
PDB1	YBR221C	TRA1	P38811	3744 aa		4.78	□□□□□ -1.64
PDB1	YBR221C	RPL7A	P05737	244 aa	Known RBP	4.78	□□□□□ -1.64
PDB1	YBR221C	GPA2	P10823	449 aa		4.78	□□□□□ -1.64
PDB1	YBR221C	ERD2	P18414	219 aa		4.78	□□□□□ -1.64
PDB1	YBR221C	NAT2	P37293	288 aa		4.78	□□□□□ -1.64
PDB1	YBR221C	GVP36	P40531	326 aa	Known RBP	4.78	□□□□□ -1.64
PDB1	YBR221C	PRY1	P47032	299 aa		4.78	□□□□□ -1.64
PDB1	YBR221C	YGL034C	P53186	121 aa		4.78	□□□□□ -1.64
PDB1	YBR221C	HHO1	P53551	258 aa		4.78	□□□□□ -1.64
PDB1	YBR221C	SNO2	P53823	222 aa		4.78	□□□□□ -1.64
PDB1	YBR221C	LSM3	P57743	89 aa	Known RBP	4.78	□□□□□ -1.64
PDB1	YBR221C	ODC1	Q03028	310 aa		4.78	□□□□□ -1.64
PDB1	YBR221C	AIM36	Q03798	255 aa		4.78	□□□□□ -1.64
PDB1	YBR221C	RPL7B	Q12213	244 aa	Known RBP	4.78	□□□□□ -1.64
PDB1	YBR221C	LAS17	Q12446	633 aa		4.78	□□□□□ -1.64
PDB1	YBR221C	SIR2	P06700	562 aa		4.77	□□□□□ -1.65
PDB1	YBR221C	YGL041W-A	P0C5N3	154 aa		4.77	□□□□□ -1.65
PDB1	YBR221C	CNB1	P25296	175 aa		4.77	□□□□□ -1.65
PDB1	YBR221C	STP22	P25604	385 aa		4.77	□□□□□ -1.65
PDB1	YBR221C	CTS1	P29029	562 aa		4.77	□□□□□ -1.65
PDB1	YBR221C	YKL102C	P34249	101 aa		4.77	□□□□□ -1.65
PDB1	YBR221C	MRPL15	P36523	253 aa		4.77	□□□□□ -1.65
PDB1	YBR221C	AVT5	P38176	459 aa		4.77	□□□□□ -1.65
PDB1	YBR221C	PEX17	P40155	199 aa		4.77	□□□□□ -1.65
PDB1	YBR221C	GWT1	P47026	490 aa		4.77	□□□□□ -1.65
PDB1	YBR221C	XPT1	P47165	209 aa		4.77	□□□□□ -1.65
PDB1	YBR221C	YGR039W	P53225	103 aa		4.77	□□□□□ -1.65
PDB1	YBR221C	YDR366C	P87287	132 aa		4.77	□□□□□ -1.65
PDB1	YBR221C	NHP10	Q03435	203 aa		4.77	□□□□□ -1.65
PDB1	YBR221C	DGA1	Q08650	418 aa		4.77	□□□□□ -1.65
PDB1	YBR221C	OSW1	Q08692	278 aa		4.77	□□□□□ -1.65
PDB1	YBR221C	RPL16A	P26784	199 aa	Known RBP	4.76	□□□□□ -1.65
PDB1	YBR221C	SNC2	P33328	115 aa		4.76	□□□□□ -1.65
PDB1	YBR221C	YPT53	P36019	220 aa		4.76	□□□□□ -1.65
PDB1	YBR221C	POP8	P38208	133 aa		4.76	□□□□□ -1.65
PDB1	YBR221C	LSM12	P38828	187 aa	Known RBP	4.76	□□□□□ -1.65
PDB1	YBR221C	PAN6	P40459	309 aa		4.76	□□□□□ -1.65
PDB1	YBR221C	CFD1	P40558	293 aa		4.76	□□□□□ -1.65
PDB1	YBR221C	AIF1	P52923	378 aa		4.76	□□□□□ -1.65
PDB1	YBR221C	YNL046W	P53956	172 aa		4.76	□□□□□ -1.65
PDB1	YBR221C	NUP100	Q02629	959 aa		4.76	□□□□□ -1.65
PDB1	YBR221C	FRE8	Q12209	686 aa		4.76	□□□□□ -1.65
PDB1	YBR221C	BI2	P03873	423 aa		4.75	□□□□□ -1.65
PDB1	YBR221C	PET8	P38921	284 aa		4.75	□□□□□ -1.65
PDB1	YBR221C	TIF34	P40217	347 aa	Known RBP	4.75	□□□□□ -1.65
PDB1	YBR221C	YPL073C	P40323	161 aa		4.75	□□□□□ -1.65
PDB1	YBR221C	GLR1	P41921	483 aa	Known RBP	4.75	□□□□□ -1.65
PDB1	YBR221C	NRM1	P53718	249 aa		4.75	□□□□□ -1.65
PDB1	YBR221C	IRC15	Q02733	499 aa		4.75	□□□□□ -1.65
PDB1	YBR221C	SDC1	Q03323	175 aa		4.75	□□□□□ -1.65
PDB1	YBR221C	MZM1	Q03429	123 aa	Predicted RBP	4.75	□□□□□ -1.65
PDB1	YBR221C	CGI121	Q03705	181 aa	Known RBP	4.75	□□□□□ -1.65
PDB1	YBR221C	YPR114W	Q06107	315 aa		4.75	□□□□□ -1.65
PDB1	YBR221C	LOA1	Q06508	300 aa		4.75	□□□□□ -1.65
PDB1	YBR221C	MCH1	Q07376	486 aa		4.75	□□□□□ -1.65
PDB1	YBR221C	YOL160W	Q08321	113 aa		4.75	□□□□□ -1.65
PDB1	YBR221C	FCY1	Q12178	158 aa		4.75	□□□□□ -1.65
PDB1	YBR221C	PCL9	Q12477	304 aa		4.75	□□□□□ -1.65
PDB1	YBR221C	BRR2	P32639	2163 aa	Known RBP	4.75	□□□□□ -1.65
PDB1	YBR221C	POL2	P21951	2222 aa	Known RBP	4.74	□□□□□ -1.65
PDB1	YBR221C	YMR316C-A	I2HB70	103 aa		4.74	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 38.5 ms