RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 COBLO75128 1261 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ANP32DO95626 131 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ASMTLO95671 621 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 FAM107AO95990 144 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 CETPP11597 493 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 VEGFAP15692 232 aaPredicted RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 RBPJQ06330 500 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 FCHO2Q0JRZ9 810 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 PABPC1LQ4VXU2 614 aaKnown RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 DAB2IPQ5VWQ8 1189 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 NUGGCQ68CJ6 796 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 TBC1D1Q86TI0 1168 aaPredicted RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 METTL3Q86U44 580 aaKnown RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 SNRNP27Q8WVK2 155 aaKnown RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 SCFD1Q8WVM8 642 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 L3MBTL2Q969R5 705 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 PBXIP1Q96AQ6 731 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 OSBPL10Q9BXB5 764 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 SLC26A6Q9BXS9 759 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 NFKBIZQ9BYH8 718 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 UNC45AQ9H3U1 944 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ATAD3AQ9NVI7 634 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 AIPL1Q9NZN9 384 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 DSEQ9UL01 958 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 HPS5Q9UPZ3 1129 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 MAPKBP1O60336 1514 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ZNF536O15090 1300 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 NOTCH4Q99466 2003 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 MYO1CO00159 1063 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 QSOX1O00391 747 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 TNFRSF10BO14763 440 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 SNX2O60749 519 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 PGM3O95394 542 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 MT-ND5P03915 603 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 FGFR1P11362 822 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 CREB1P16220 341 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 COPAP53621 1224 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 FAPQ12884 760 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 MAPRE1Q15691 268 aaKnown RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 TIGD6Q17RP2 521 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 IKBIPQ70UQ0 350 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 SZRD1Q7Z422 152 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 GJD3Q8N144 294 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 SPIRE2Q8WWL2 714 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 CYTH2Q99418 400 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ZBTB18Q99592 522 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 KBTBD4Q9NVX7 518 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 PDP2Q9P2J9 529 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 PNMA8BQ9ULN7 279 aaPredicted RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 PHF8Q9UPP1 1060 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 KLHL20Q9Y2M5 609 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 PSMD11O00231 422 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 E2F3O00716 465 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 LSM1O15116 133 aaKnown RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ZBTB7BO15156 539 aaPredicted RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 SLC28A2O43868 658 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 SMNDC1O75940 238 aaKnown RBP eCLIP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 SESN2P58004 480 aaPredicted RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 SP3Q02447 781 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ELAVL2Q12926 359 aaKnown RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 TUBA3CQ13748 450 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 RTN1Q16799 776 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 PTPRNQ16849 979 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 TCHHL1Q5QJ38 904 aaPredicted RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 THEMIS2Q5TEJ8 643 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 LCTLQ6UWM7 567 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 RABEPKQ7Z6M1 372 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 PLEKHM2Q8IWE5 1019 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 CPXCR1Q8N123 301 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 B4GALNT2Q8NHY0 566 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 RP9Q8TA86 221 aaKnown RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 RPAP3Q9H6T3 665 aaPredicted RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 CCSER2Q9H7U1 834 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 RSAD1Q9HA92 442 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 KANSL3Q9P2N6 904 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ATPIF1Q9UII2 106 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 FBXO10Q9UK96 956 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ANKRD36BQ8N2N9 1353 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 ARHGEF11O15085 1522 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 MROH2BQ7Z745 1585 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 TBC1D3BA6NDS4 549 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 BTN3A3O00478 584 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 PRRG1O14668 218 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 FOXO3O43524 673 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 SYPP08247 313 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 MLNP12872 115 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 CTSEP14091 401 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 HARS2P49590 506 aaKnown RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 PPIDQ08752 370 aaKnown RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 XRCC4Q13426 336 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 CATSPEREQ5SY80 951 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 FIP1L1Q6UN15 594 aaKnown RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 NCLNQ969V3 563 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 THAP11Q96EK4 314 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 MCRS1Q96EZ8 462 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 VPS16Q9H269 839 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 DMAP1Q9NPF5 467 aaPredicted RBP2.91□□□□□ -1.94
SCN1A-219ENST00000641575 CYLDQ9NQC7 956 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 VPS9D1Q9Y2B5 631 aa2.91□□□□□ -1.94
SCN1A-219ENST00000641575 CFAP74Q9C0B2 1584 aa2.91□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms