RNA–Protein interactions for RNA: ENST00000637871.1

CLN3-263, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,606 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-263ENST00000637871 EHD2Q9NZN4 543 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 TRPC6Q9Y210 931 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 KPNA6O60684 536 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 PHACTR2O75167 634 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 CTNNA2P26232 953 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 DNA2P51530 1060 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 DMTNQ08495 405 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 CUL2Q13617 745 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 ITGA7Q13683 1181 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 UBE2Q1Q7Z7E8 422 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 RNF149Q8NC42 400 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 HDAC7Q8WUI4 952 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 TCHPQ9BT92 498 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 FZD8Q9H461 694 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 SUGCTQ9HAC7 445 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 SLTMQ9NWH9 1034 aaKnown RBP eCLIP19.62■□□□□ 0.73
CLN3-263ENST00000637871 SMARCAL1Q9NZC9 954 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 PCDH10Q9P2E7 1040 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 ANKFY1Q9P2R3 1169 aa19.62■□□□□ 0.73
CLN3-263ENST00000637871 OPA1O60313 960 aa19.61■□□□□ 0.73
CLN3-263ENST00000637871 CLTAP09496 248 aa19.61■□□□□ 0.73
CLN3-263ENST00000637871 SMIM10L2AP0DMW4 78 aa19.61■□□□□ 0.73
CLN3-263ENST00000637871 SMIM10L2BP0DMW5 78 aa19.61■□□□□ 0.73
CLN3-263ENST00000637871 IGBP1P78318 339 aa19.61■□□□□ 0.73
CLN3-263ENST00000637871 FAM187BQ17R55 369 aa19.61■□□□□ 0.73
CLN3-263ENST00000637871 DUOXA2Q1HG44 320 aa19.61■□□□□ 0.73
CLN3-263ENST00000637871 TAF3Q5VWG9 929 aa19.61■□□□□ 0.73
CLN3-263ENST00000637871 MPZL3Q6UWV2 235 aa19.61■□□□□ 0.73
CLN3-263ENST00000637871 NECAB2Q7Z6G3 386 aa19.61■□□□□ 0.73
CLN3-263ENST00000637871 IFNLR1Q8IU57 520 aaPredicted RBP19.61■□□□□ 0.73
CLN3-263ENST00000637871 EFCAB13Q8IY85 973 aa19.61■□□□□ 0.73
CLN3-263ENST00000637871 ZNF564Q8TBZ8 553 aaPredicted RBP19.61■□□□□ 0.73
CLN3-263ENST00000637871 EXOC4Q96A65 974 aa19.61■□□□□ 0.73
CLN3-263ENST00000637871 ZNF653Q96CK0 615 aa19.61■□□□□ 0.73
CLN3-263ENST00000637871 ZBTB45Q96K62 511 aaPredicted RBP19.61■□□□□ 0.73
CLN3-263ENST00000637871 HAPLN2Q9GZV7 340 aa19.61■□□□□ 0.73
CLN3-263ENST00000637871 EPB41L5Q9HCM4 733 aa19.61■□□□□ 0.73
CLN3-263ENST00000637871 COG5Q9UP83 839 aa19.61■□□□□ 0.73
CLN3-263ENST00000637871 ALPK3Q96L96 1907 aa19.6■□□□□ 0.73
CLN3-263ENST00000637871 ZBTB42B2RXF5 422 aa19.6■□□□□ 0.73
CLN3-263ENST00000637871 BHMG1C9JSJ3 638 aaPredicted RBP19.6■□□□□ 0.73
CLN3-263ENST00000637871 SART1O43290 800 aaKnown RBP19.6■□□□□ 0.73
CLN3-263ENST00000637871 CAPN15O75808 1086 aa19.6■□□□□ 0.73
CLN3-263ENST00000637871 IL18RAPO95256 599 aa19.6■□□□□ 0.73
CLN3-263ENST00000637871 UNGP13051 313 aaPredicted RBP19.6■□□□□ 0.73
CLN3-263ENST00000637871 PROZP22891 400 aa19.6■□□□□ 0.73
CLN3-263ENST00000637871 SLC1A1P43005 524 aa19.6■□□□□ 0.73
CLN3-263ENST00000637871 PTENP60484 403 aa19.6■□□□□ 0.73
CLN3-263ENST00000637871 YWHAEP62258 255 aaKnown RBP19.6■□□□□ 0.73
CLN3-263ENST00000637871 ZNF200P98182 395 aaPredicted RBP19.6■□□□□ 0.73
CLN3-263ENST00000637871 SLC7A5Q01650 507 aa19.6■□□□□ 0.73
CLN3-263ENST00000637871 SGSM1Q2NKQ1 1148 aa19.6■□□□□ 0.73
CLN3-263ENST00000637871 SND1Q7KZF4 910 aaKnown RBP eCLIP19.6■□□□□ 0.731e-7■■■□□ 15.8
CLN3-263ENST00000637871 KATNAL1Q9BW62 490 aa19.6■□□□□ 0.73
CLN3-263ENST00000637871 SETD4Q9NVD3 440 aa19.6■□□□□ 0.73
CLN3-263ENST00000637871 PRMT7Q9NVM4 692 aaPredicted RBP19.6■□□□□ 0.73
CLN3-263ENST00000637871 TRIP12Q14669 1992 aaPredicted RBP19.6■□□□□ 0.73
CLN3-263ENST00000637871 FAM187AA6NFU0 413 aa19.59■□□□□ 0.73
CLN3-263ENST00000637871 ZMYND10O75800 440 aa19.59■□□□□ 0.73
CLN3-263ENST00000637871 CABYRO75952 493 aa19.59■□□□□ 0.73
CLN3-263ENST00000637871 VNN1O95497 513 aa19.59■□□□□ 0.73
CLN3-263ENST00000637871 CYP1A1P04798 512 aaPredicted RBP19.59■□□□□ 0.73
CLN3-263ENST00000637871 GLI1P08151 1106 aa19.59■□□□□ 0.73
CLN3-263ENST00000637871 GUCY2DQ02846 1103 aa19.59■□□□□ 0.73
CLN3-263ENST00000637871 MKRN4PQ13434 485 aaPredicted RBP19.59■□□□□ 0.73
CLN3-263ENST00000637871 NCOA4Q13772 614 aa19.59■□□□□ 0.73
CLN3-263ENST00000637871 LRRC26Q2I0M4 334 aa19.59■□□□□ 0.73
CLN3-263ENST00000637871 LIN9Q5TKA1 542 aa19.59■□□□□ 0.73
CLN3-263ENST00000637871 DNAAF5Q86Y56 855 aa19.59■□□□□ 0.73
CLN3-263ENST00000637871 C7orf31Q8N865 590 aa19.59■□□□□ 0.73
CLN3-263ENST00000637871 RNPC3Q96LT9 517 aaKnown RBP19.59■□□□□ 0.73
CLN3-263ENST00000637871 ZSWIM1Q9BR11 485 aa19.59■□□□□ 0.73
CLN3-263ENST00000637871 NUP85Q9BW27 656 aa19.59■□□□□ 0.73
CLN3-263ENST00000637871 CPSF3Q9UKF6 684 aaKnown RBP19.59■□□□□ 0.73
CLN3-263ENST00000637871 TNFSF13BQ9Y275 285 aa19.59■□□□□ 0.73
CLN3-263ENST00000637871 RAD51CO43502 376 aa19.58■□□□□ 0.73
CLN3-263ENST00000637871 B4GALT4O60513 344 aa19.58■□□□□ 0.73
CLN3-263ENST00000637871 SRGAP2CP0DJJ0 459 aa19.58■□□□□ 0.73
CLN3-263ENST00000637871 MYBL2P10244 700 aa19.58■□□□□ 0.73
CLN3-263ENST00000637871 INSRRP14616 1297 aa19.58■□□□□ 0.73
CLN3-263ENST00000637871 ACO1P21399 889 aaKnown RBP19.58■□□□□ 0.73
CLN3-263ENST00000637871 TMOD1P28289 359 aa19.58■□□□□ 0.73
CLN3-263ENST00000637871 GBP1P32455 592 aa19.58■□□□□ 0.73
CLN3-263ENST00000637871 PHKA2P46019 1235 aa19.58■□□□□ 0.73
CLN3-263ENST00000637871 NOP14P78316 857 aaKnown RBP19.58■□□□□ 0.73
CLN3-263ENST00000637871 CENPCQ03188 943 aa19.58■□□□□ 0.73
CLN3-263ENST00000637871 PPFIA1Q13136 1202 aa19.58■□□□□ 0.73
CLN3-263ENST00000637871 DHX34Q14147 1143 aaKnown RBP19.58■□□□□ 0.73
CLN3-263ENST00000637871 SEL1L2Q5TEA6 688 aa19.58■□□□□ 0.73
CLN3-263ENST00000637871 GDF6Q6KF10 455 aaPredicted RBP19.58■□□□□ 0.73
CLN3-263ENST00000637871 EFCAB12Q6NXP0 572 aa19.58■□□□□ 0.73
CLN3-263ENST00000637871 SLC39A5Q6ZMH5 540 aa19.58■□□□□ 0.73
CLN3-263ENST00000637871 MAIP1Q8WWC4 291 aa19.58■□□□□ 0.73
CLN3-263ENST00000637871 RAB17Q9H0T7 212 aa19.58■□□□□ 0.73
CLN3-263ENST00000637871 GOLPH3Q9H4A6 298 aa19.58■□□□□ 0.73
CLN3-263ENST00000637871 MRPL47Q9HD33 250 aaKnown RBP19.58■□□□□ 0.73
CLN3-263ENST00000637871 PTPRHQ9HD43 1115 aa19.58■□□□□ 0.73
CLN3-263ENST00000637871 FAM114A2Q9NRY5 505 aa19.58■□□□□ 0.73
CLN3-263ENST00000637871 TRMT13Q9NUP7 481 aaKnown RBP19.58■□□□□ 0.73
CLN3-263ENST00000637871 PCDHA3Q9Y5H8 950 aa19.58■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms