RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 KREMEN1Q96MU8 473 aa15.18■□□□□ 0.02
CLN3-242ENST00000635958 APOBEC3GQ9HC16 384 aaKnown RBP15.18■□□□□ 0.02
CLN3-242ENST00000635958 ZNF446Q9NWS9 450 aa15.18■□□□□ 0.02
CLN3-242ENST00000635958 TMEM161AQ9NX61 479 aa15.18■□□□□ 0.02
CLN3-242ENST00000635958 NOL12Q9UGY1 213 aaKnown RBP eCLIP15.18■□□□□ 0.02
CLN3-242ENST00000635958 TTC3P53804 2025 aa15.18■□□□□ 0.02
CLN3-242ENST00000635958 ANO9A1A5B4 782 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 LRRC53A6NM62 1247 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 ITGB3P05106 788 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 MLH1P40692 756 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 TSR1Q2NL82 804 aaKnown RBP15.17■□□□□ 0.02
CLN3-242ENST00000635958 GLRA4Q5JXX5 417 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 CNKSR3Q6P9H4 555 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 GOLGA1Q92805 767 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 C18orf25Q96B23 403 aaPredicted RBP15.17■□□□□ 0.02
CLN3-242ENST00000635958 IMPG2Q9BZV3 1241 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 GPR88Q9GZN0 384 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 SLC38A7Q9NVC3 462 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 MIOSQ9NXC5 875 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 NUB1Q9Y5A7 615 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 MRFAP1Q9Y605 127 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 PDE4DIPQ5VU43 2346 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.17■□□□□ 0.02
CLN3-242ENST00000635958 PIRO00625 290 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 THP07101 528 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 RAG1P15918 1043 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 LRPAP1P30533 357 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 AFF1P51825 1210 aaKnown RBP15.17■□□□□ 0.02
CLN3-242ENST00000635958 GUCY2FP51841 1108 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 MFAP3P55082 362 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 GNG11P61952 73 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 NOP14P78316 857 aaKnown RBP15.17■□□□□ 0.02
CLN3-242ENST00000635958 GPS2Q13227 327 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 DRAP1Q14919 205 aaPredicted RBP15.17■□□□□ 0.02
CLN3-242ENST00000635958 BRD3Q15059 726 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 FMNL3Q8IVF7 1028 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 PPM1KQ8N3J5 372 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 LRRC52Q8N7C0 313 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 CEP112Q8N8E3 955 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 SPAG5Q96R06 1193 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 RNF216Q9NWF9 866 aaPredicted RBP15.17■□□□□ 0.02
CLN3-242ENST00000635958 TUBGCP4Q9UGJ1 667 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 AGAP1Q9UPQ3 857 aa15.17■□□□□ 0.02
CLN3-242ENST00000635958 F8VZ95 297 aa15.16■□□□□ 0.02
CLN3-242ENST00000635958 PFKMP08237 780 aa15.16■□□□□ 0.02
CLN3-242ENST00000635958 TBXAS1P24557 533 aaPredicted RBP15.16■□□□□ 0.02
CLN3-242ENST00000635958 POLR2BP30876 1174 aaKnown RBP15.16■□□□□ 0.02
CLN3-242ENST00000635958 STAT1P42224 750 aa15.16■□□□□ 0.02
CLN3-242ENST00000635958 SOX4Q06945 474 aaPredicted RBP15.16■□□□□ 0.02
CLN3-242ENST00000635958 RAPGEF1Q13905 1077 aa15.16■□□□□ 0.02
CLN3-242ENST00000635958 SFMBT2Q5VUG0 894 aa15.16■□□□□ 0.02
CLN3-242ENST00000635958 C9orf57Q5W0N0 161 aa15.16■□□□□ 0.02
CLN3-242ENST00000635958 SPOPLQ6IQ16 392 aa15.16■□□□□ 0.02
CLN3-242ENST00000635958 RSRC2Q7L4I2 434 aaKnown RBP15.16■□□□□ 0.02
CLN3-242ENST00000635958 IRF2BP2Q7Z5L9 587 aa15.16■□□□□ 0.02
CLN3-242ENST00000635958 DEFB128Q7Z7B8 93 aa15.16■□□□□ 0.02
CLN3-242ENST00000635958 TMTC1Q8IUR5 882 aa15.16■□□□□ 0.02
CLN3-242ENST00000635958 TMEM199Q8N511 208 aa15.16■□□□□ 0.02
CLN3-242ENST00000635958 SHC3Q92529 594 aa15.16■□□□□ 0.02
CLN3-242ENST00000635958 KAT5Q92993 513 aa15.16■□□□□ 0.02
CLN3-242ENST00000635958 RPS6KC1Q96S38 1066 aa15.16■□□□□ 0.02
CLN3-242ENST00000635958 CARD6Q9BX69 1037 aa15.16■□□□□ 0.02
CLN3-242ENST00000635958 PRDM5Q9NQX1 630 aaPredicted RBP15.16■□□□□ 0.02
CLN3-242ENST00000635958 RNF19AQ9NV58 838 aa15.16■□□□□ 0.02
CLN3-242ENST00000635958 ZNHIT6Q9NWK9 470 aaKnown RBP15.16■□□□□ 0.02
CLN3-242ENST00000635958 MYO1AQ9UBC5 1043 aa15.16■□□□□ 0.02
CLN3-242ENST00000635958 FOXN3O00409 490 aaPredicted RBP15.15■□□□□ 0.02
CLN3-242ENST00000635958 KRT19P08727 400 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 SOX5P35711 763 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 CUL2Q13617 745 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 IKBKEQ14164 716 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 ZNF699Q32M78 642 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 RPUSD2Q8IZ73 545 aaKnown RBP15.15■□□□□ 0.02
CLN3-242ENST00000635958 TMEM130Q8N3G9 435 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 RNF169Q8NCN4 708 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 RSPH1Q8WYR4 309 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 HPDLQ96IR7 371 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 ARFGAP3Q9NP61 516 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.15■□□□□ 0.026e-9■■■■■ 134.6
CLN3-242ENST00000635958 ABHD14A-ACY1A0A1B0GW23 586 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 CSF2RAP15509 400 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 PRKCIP41743 596 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 SCNN1GP51170 649 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 GRIK3Q13003 919 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 ARHGAP44Q17R89 818 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 CLLU1OSQ5K130 101 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 HGSNATQ68CP4 663 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 GLB1LQ6UWU2 654 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 CYP26C1Q6V0L0 522 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 FAM71AQ8IYT1 594 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 HNRNPLLQ8WVV9 542 aaKnown RBP15.15■□□□□ 0.02
CLN3-242ENST00000635958 ELMO3Q96BJ8 720 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 NIF3L1Q9GZT8 377 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 FAM124BQ9H5Z6 455 aaPredicted RBP15.15■□□□□ 0.02
CLN3-242ENST00000635958 KANSL3Q9P2N6 904 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 CNTN6Q9UQ52 1028 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 PCDHB7Q9Y5E2 793 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 ALPK3Q96L96 1907 aa15.15■□□□□ 0.02
CLN3-242ENST00000635958 CCDC151A5D8V7 595 aa15.14■□□□□ 0.01
CLN3-242ENST00000635958 KIF5CO60282 957 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms