RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 EURLQ9NYK6 297 aa13.55□□□□□ -0.24
LINC00540-203ENST00000631321 ADGRA2Q96PE1 1338 aa13.55□□□□□ -0.24
LINC00540-203ENST00000631321 WDR81Q562E7 1941 aa13.55□□□□□ -0.24
LINC00540-203ENST00000631321 MGRN1O60291 552 aa13.55□□□□□ -0.24
LINC00540-203ENST00000631321 CREB1P16220 341 aa13.55□□□□□ -0.24
LINC00540-203ENST00000631321 ICAM3P32942 547 aa13.55□□□□□ -0.24
LINC00540-203ENST00000631321 STAT4Q14765 748 aa13.55□□□□□ -0.24
LINC00540-203ENST00000631321 TMEM132BQ14DG7 1078 aa13.55□□□□□ -0.24
LINC00540-203ENST00000631321 DAB2IPQ5VWQ8 1189 aa13.55□□□□□ -0.24
LINC00540-203ENST00000631321 TMEM270Q6UE05 265 aa13.55□□□□□ -0.24
LINC00540-203ENST00000631321 ANKS1BQ7Z6G8 1248 aa13.55□□□□□ -0.24
LINC00540-203ENST00000631321 ZCCHC9Q8N567 271 aaKnown RBP13.55□□□□□ -0.24
LINC00540-203ENST00000631321 FEZF2Q8TBJ5 459 aa13.55□□□□□ -0.24
LINC00540-203ENST00000631321 AS3MTQ9HBK9 375 aa13.55□□□□□ -0.24
LINC00540-203ENST00000631321 PARVAQ9NVD7 372 aa13.55□□□□□ -0.24
LINC00540-203ENST00000631321 USP15Q9Y4E8 981 aaPredicted RBP13.55□□□□□ -0.24
LINC00540-203ENST00000631321 RLFQ13129 1914 aa13.55□□□□□ -0.24
LINC00540-203ENST00000631321 CDH16O75309 829 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 OATP04181 439 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 PTPRAP18433 802 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 NOP14P78316 857 aaKnown RBP13.54□□□□□ -0.24
LINC00540-203ENST00000631321 LMNB2Q03252 620 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 LRRC38Q5VT99 294 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 IZUMO3Q5VZ72 239 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 SMYD5Q6GMV2 418 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 PASD1Q8IV76 773 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 CCHCR1Q8TD31 782 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 TMEM143Q96AN5 459 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 ZBTB45Q96K62 511 aaPredicted RBP13.54□□□□□ -0.24
LINC00540-203ENST00000631321 NIFKQ9BYG3 293 aaKnown RBP13.54□□□□□ -0.24
LINC00540-203ENST00000631321 TMEM134Q9H6X4 195 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 ACAD9Q9H845 621 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 CTNNAL1Q9UBT7 734 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 IP6K2Q9UHH9 426 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 NUB1Q9Y5A7 615 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 TLR3O15455 904 aaKnown RBP13.54□□□□□ -0.24
LINC00540-203ENST00000631321 ATP2C2O75185 946 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 MMP8P22894 467 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 SP4Q02446 784 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 NFX1Q12986 1120 aaKnown RBP13.54□□□□□ -0.24
LINC00540-203ENST00000631321 MPP2Q14168 576 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 SNCBQ16143 134 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 ZBTB41Q5SVQ8 909 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 NBPF12Q5TAG4 269 aaPredicted RBP13.54□□□□□ -0.24
LINC00540-203ENST00000631321 DCAF15Q66K64 600 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 RCOR2Q8IZ40 523 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 RIBC1Q8N443 379 aaPredicted RBP13.54□□□□□ -0.24
LINC00540-203ENST00000631321 DEPTORQ8TB45 409 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 DYDC1Q8WWB3 177 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 ZKSCAN4Q969J2 545 aaPredicted RBP13.54□□□□□ -0.24
LINC00540-203ENST00000631321 PWWP2AQ96N64 755 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 TEX13BQ9BXU2 312 aa13.54□□□□□ -0.24
LINC00540-203ENST00000631321 DNAJC17Q9NVM6 304 aaKnown RBP13.54□□□□□ -0.24
LINC00540-203ENST00000631321 IGKV6D-21A0A0A0MT36 114 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 TCRBV5S1A1TA0A578 114 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 TMEM191CA6NGB0 347 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 TCP11X1B4DZS4 312 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 K7ERI5 159 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 LIASO43766 372 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 TMEM191BP0C7N4 346 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 CETPP11597 493 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 PTPN7P35236 360 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 CETN2P41208 172 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 SP2Q02086 613 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 MKRN3Q13064 507 aaKnown RBP13.53□□□□□ -0.24
LINC00540-203ENST00000631321 LRRC14Q15048 493 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 CCDC142Q17RM4 750 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 GALNTL6Q49A17 601 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 CYP4X1Q8N118 509 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 OR5B17Q8NGF7 314 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 RBM41Q96IZ5 413 aaKnown RBP13.53□□□□□ -0.24
LINC00540-203ENST00000631321 CCDC77Q9BR77 488 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 MSTO1Q9BUK6 570 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 YY1AP1Q9H869 796 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 ZNF302Q9NR11 478 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 NAALADL1Q9UQQ1 740 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 SIP14410 1827 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 CFAP73A6NFT4 308 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 LSM8O95777 96 aaKnown RBP13.53□□□□□ -0.24
LINC00540-203ENST00000631321 BRAFP15056 766 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 CD58P19256 250 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 VPS41P49754 854 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 AP3M2P53677 418 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 ELF3P78545 371 aaPredicted RBP13.53□□□□□ -0.24
LINC00540-203ENST00000631321 MCL1Q07820 350 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 GRM1Q13255 1194 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 NCOA4Q13772 614 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 FAM228AQ86W67 206 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 MGARPQ8TDB4 240 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 ZNF526Q8TF50 670 aaPredicted RBP13.53□□□□□ -0.24
LINC00540-203ENST00000631321 SLITRK1Q96PX8 696 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 PLCD4Q9BRC7 762 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 TARS2Q9BW92 718 aaKnown RBP13.53□□□□□ -0.24
LINC00540-203ENST00000631321 PDGFDQ9GZP0 370 aaPredicted RBP13.53□□□□□ -0.24
LINC00540-203ENST00000631321 CD248Q9HCU0 757 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 ABCF3Q9NUQ8 709 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 FGFR1OP2Q9NVK5 253 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 FBXO40Q9UH90 709 aa13.53□□□□□ -0.24
LINC00540-203ENST00000631321 TPX2Q9ULW0 747 aaKnown RBP13.53□□□□□ -0.24
LINC00540-203ENST00000631321 DOCK1Q14185 1865 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms