RNA–Protein interactions for RNA: ENST00000621870.4

GGA3-223, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 1 (best)

Gene GGA3, Length 4,034 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-223ENST00000621870 TBKBP1A7MCY6 615 aa9.74□□□□□ -0.85
GGA3-223ENST00000621870 CAPN15O75808 1086 aa9.74□□□□□ -0.85
GGA3-223ENST00000621870 LGALS2P05162 132 aa9.74□□□□□ -0.85
GGA3-223ENST00000621870 PRKAR2AP13861 404 aaKnown RBP9.74□□□□□ -0.85
GGA3-223ENST00000621870 GARTP22102 1010 aa9.74□□□□□ -0.85
GGA3-223ENST00000621870 MYL6P60660 151 aa9.74□□□□□ -0.85
GGA3-223ENST00000621870 SNRPFP62306 86 aaKnown RBP9.74□□□□□ -0.85
GGA3-223ENST00000621870 CUL2Q13617 745 aa9.74□□□□□ -0.85
GGA3-223ENST00000621870 RCN2Q14257 317 aa9.74□□□□□ -0.85
GGA3-223ENST00000621870 ITPRIPL1Q6GPH6 555 aa9.74□□□□□ -0.85
GGA3-223ENST00000621870 CCDC60Q8IWA6 550 aaPredicted RBP9.74□□□□□ -0.85
GGA3-223ENST00000621870 EFHBQ8N7U6 833 aa9.74□□□□□ -0.85
GGA3-223ENST00000621870 SCFD1Q8WVM8 642 aa9.74□□□□□ -0.85
GGA3-223ENST00000621870 CYFIP2Q96F07 1278 aa9.74□□□□□ -0.85
GGA3-223ENST00000621870 DDX56Q9NY93 547 aaKnown RBP9.74□□□□□ -0.85
GGA3-223ENST00000621870 UVRAGQ9P2Y5 699 aa9.74□□□□□ -0.85
GGA3-223ENST00000621870 PPP1R12AO14974 1030 aaPredicted RBP9.73□□□□□ -0.85
GGA3-223ENST00000621870 ZFXP17010 805 aaPredicted RBP9.73□□□□□ -0.85
GGA3-223ENST00000621870 MUTP22033 750 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 EPHB2P29323 1055 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 NSUN2Q08J23 767 aaKnown RBP eCLIP9.73□□□□□ -0.85
GGA3-223ENST00000621870 NR1I3Q14994 352 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 KLC3Q6P597 504 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 TRIM65Q6PJ69 517 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 GPR142Q7Z601 462 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 WHAMMQ8TF30 809 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 MUC3BQ9H195 1237 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 DIS3Q9Y2L1 958 aaKnown RBP9.73□□□□□ -0.85
GGA3-223ENST00000621870 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.73□□□□□ -0.85
GGA3-223ENST00000621870 KNL1Q8NG31 2342 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 APOL1O14791 398 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 KRT14P02533 472 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 CD44P16070 742 aaKnown RBP9.73□□□□□ -0.85
GGA3-223ENST00000621870 CCL23P55773 120 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 TWF1Q12792 350 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 PTGISQ16647 500 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 TRIM67Q6ZTA4 783 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 TAS2R42Q7RTR8 314 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 LRP10Q7Z4F1 713 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 CDKL3Q8IVW4 592 aaPredicted RBP9.73□□□□□ -0.85
GGA3-223ENST00000621870 MRPS31Q92665 395 aaKnown RBP9.73□□□□□ -0.85
GGA3-223ENST00000621870 FAM118BQ9BPY3 351 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.73□□□□□ -0.859e-7■■■■□ 19.3
GGA3-223ENST00000621870 RANBP17Q9H2T7 1088 aaKnown RBP9.73□□□□□ -0.85
GGA3-223ENST00000621870 LCMT1Q9UIC8 334 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 P4HA2O15460 535 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 KCNN4O15554 427 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 PEX10O60683 326 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 MAP3K6O95382 1288 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 ASMTLO95671 621 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 CASP2P42575 452 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 ACADSBP45954 432 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 HARS2P49590 506 aaKnown RBP9.73□□□□□ -0.85
GGA3-223ENST00000621870 FKBP1BP68106 108 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 MAP2K5Q13163 448 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 TREML2Q5T2D2 321 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 TTC23LQ6PF05 361 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 DLK2Q6UY11 383 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 IL31RAQ8NI17 732 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 WNK4Q96J92 1243 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 ZBTB45Q96K62 511 aaPredicted RBP9.73□□□□□ -0.85
GGA3-223ENST00000621870 ADAM2Q99965 735 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.73□□□□□ -0.85
GGA3-223ENST00000621870 TRIM10Q9UDY6 481 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 NR2E3Q9Y5X4 410 aa9.73□□□□□ -0.85
GGA3-223ENST00000621870 E5RI56 91 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 TBC1D12O60347 775 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 KRT38O76015 456 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 GYPCP04921 128 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 ATP1A1P05023 1023 aaKnown RBP9.72□□□□□ -0.85
GGA3-223ENST00000621870 ELNP15502 786 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 MX2P20592 715 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 GUCY2CP25092 1073 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 ARSEP51690 589 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 SNX17Q15036 470 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 EFHC1Q5JVL4 640 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 FBXO47Q5MNV8 452 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 RNF135Q8IUD6 432 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 FBXO32Q969P5 355 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 TTC17Q96AE7 1141 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 ATXN7L3BQ96GX2 97 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 CAPNS2Q96L46 248 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 RPRD1AQ96P16 312 aaPredicted RBP9.72□□□□□ -0.85
GGA3-223ENST00000621870 ABCB6Q9NP58 842 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 RAB6BQ9NRW1 208 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 UBR1Q8IWV7 1749 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 FKTNO75072 461 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 RASSF2P50749 326 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 STX1BP61266 288 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 PDIA2Q13087 525 aaKnown RBP9.72□□□□□ -0.85
GGA3-223ENST00000621870 TDRD10Q5VZ19 366 aaKnown RBP9.72□□□□□ -0.85
GGA3-223ENST00000621870 CD302Q8IX05 232 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 ELMO3Q96BJ8 720 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 PGLYRP2Q96PD5 576 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 DEFB118Q96PH6 123 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 GAD1Q99259 594 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 NDFIP2Q9NV92 336 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 AFF4Q9UHB7 1163 aaKnown RBP9.72□□□□□ -0.85
GGA3-223ENST00000621870 KIF20BQ96Q89 1820 aa9.72□□□□□ -0.85
GGA3-223ENST00000621870 MED1Q15648 1581 aaPredicted RBP9.72□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms